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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004360 through 18771 annotations produced 1 hits



Wnt oncogene analog 2 (Wnt2):

Annotation Number : CG1916
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004360
Gbrowse : chr2R:5381673-5390695 (+) // 100.0 //
Probeset : 1637438_at
Accessions : protein= NP_476810;, nucleotide= NM_057462;
Pathway : calcium modulating pathway // inferred from electronic annotation /// 0007275 // multicellular organismal development /
Interpro : 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005576 // extracellular region /
FlyMine data for FBgn0004360.
Homophila reports that CG1916 is a close match (3e-52) to human gene WNT10A (NP_079492), a gene associated with Odontoonychodermal dysplasia, 257980 (3).
BioGrid reports that CG1916 interacts with CG7926 CG17964 .
TRiP has 3 RNAi stocks for FBgn0004360 available for purchase.
VDRC has 3 RNAi stocks for FBgn0004360 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.10None
Head12 30 of 4 1.60None
Eye2 00 of 4 0.27None
Thoracicoabdominal ganglion1 00 of 4 0.20None
Salivary gland9 40 of 4 1.31None
Crop2 00 of 4 0.30None
Midgut1 00 of 4 0.20None
Tubule2 00 of 4 0.30Down
Hindgut24 20 of 4 3.30Up
Heart0 00 of 4 0.13None
Fat body1 00 of 4 0.23None
Ovary1 00 of 4 0.10None
Testis39 34 of 4 5.30Up
Male accessory glands7 30 of 4 1.00None
Virgin spermatheca11 11 of 4 1.61None
Mated spermatheca19 20 of 4 2.67Up
Adult carcass13 40 of 4 1.80None
Larval CNS23 34 of 4 3.14Up
Larval Salivary gland1 00 of 4 0.24None
Larval midgut1 00 of 4 0.25None
Larval tubule1 00 of 4 0.20None
Larval hindgut14 00 of 4 1.89None
Larval fat body1 00 of 4 0.20None
Larval trachea4 10 of 4 0.54None
Larval carcass6 20 of 4 0.92None
S2 cells (growing)1 00 of 4 0.21None
Whole fly7 30 of 4

Looking for FBgn0004360. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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