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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004363 through 18771 annotations produced 1 hits



Voltage-dependent anion-selective channel (porin):

Annotation Number : CG6647
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004363
Gbrowse : chr2L:10847226-10850868 (-) // 100.0 //
Probeset : 1622947_s_at
Accessions : protein= NP_001033899; /// NP_476813; /// NP_599110;, nucleotide= NM_001038810; /// NM_057465; /// NM_134283;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005741 // mitochondrial outer membrane // inferred
Interpro : 0008308 // voltage-gated anion channel activity // inferred from direct assay /// 0008308 // voltage-gated anion channel
FlyMine data for FBgn0004363.
BDGP gene expression has embryonic in situ data for porin: 15 pix of staining in 29 body parts.
TRiP has 1 RNAi stocks for FBgn0004363 available for purchase.
VDRC has 1 RNAi stocks for FBgn0004363 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2424 404 of 4 1.30Up
Head2246 824 of 4 1.20Up
Eye2716 534 of 4 1.44Up
Thoracicoabdominal ganglion3065 634 of 4 1.60Up
Salivary gland1501 564 of 4 0.80Down
Crop1893 1054 of 4 1.00None
Midgut2225 284 of 4 1.20Up
Tubule2938 594 of 4 1.60Up
Hindgut3131 1454 of 4 1.70Up
Heart2350 784 of 4 1.25Up
Fat body2837 2064 of 4 1.50Up
Ovary2039 284 of 4 1.10None
Testis796 394 of 4 0.40Down
Male accessory glands1458 244 of 4 0.80Down
Virgin spermatheca3179 634 of 4 1.68Up
Mated spermatheca3029 734 of 4 1.60Up
Adult carcass2626 674 of 4 1.40Up
Larval CNS2252 1044 of 4 1.19Up
Larval Salivary gland1534 664 of 4 0.81Down
Larval midgut1528 714 of 4 0.81Down
Larval tubule2662 1994 of 4 1.40Up
Larval hindgut3463 454 of 4 1.83Up
Larval fat body945 844 of 4 0.50Down
Larval trachea1657 1474 of 4 0.88None
Larval carcass2248 2584 of 4 1.19None
S2 cells (growing)1193 194 of 4 0.63Down
Whole fly1887 884 of 4

Looking for FBgn0004363. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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