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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004367 through 18771 annotations produced 1 hits



meiotic 41 (mei-41):

Annotation Number : CG4252
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004367
Gbrowse : chrX:16285793-16293601 (+) // 100.0 //
Probeset : 1635747_at
Accessions : protein= NP_523369;, nucleotide= NM_078645;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electr
FlyMine data for FBgn0004367.
Homophila reports that CG4252 is a close match (2e-50) to human gene AT1;ATA;ATM (NP_000042), a gene associated with Ataxia-telangiectasia, 208900 (3);Lymphoma, B-cell non-Hodgkin, somatic (3);Lymphoma, mantle cell (3);T-cell prolymphocytic leukemia, sporadic (3);{Breast cancer, susceptibility to}, 114480 (3).
BioGrid reports that CG4252 interacts with CG8171 CG8016 CG3325 CG14884 CG4711 CG14827 CG4488 CG4488 CG4488 CG4488 CG7972 CG17161 .
TRiP has 2 RNAi stocks for FBgn0004367 available for purchase.
VDRC has 2 RNAi stocks for FBgn0004367 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 ± 12 of 4 0.50Down
Head12 ± 13 of 4 0.60Down
Eye13 ± 03 of 4 0.66Down
Thoracicoabdominal ganglion12 ± 03 of 4 0.60Down
Salivary gland6 ± 40 of 4 0.31Down
Crop10 ± 12 of 4 0.50Down
Midgut8 ± 40 of 4 0.40None
Tubule4 ± 10 of 4 0.20Down
Hindgut8 ± 11 of 4 0.40Down
Heart11 ± 04 of 4 0.57Down
Fat body16 ± 33 of 4 0.79None
Ovary56 ± 44 of 4 2.80Up
Testis6 ± 10 of 4 0.30Down
Male accessory glands13 ± 10 of 4 0.70Down
Virgin spermatheca11 ± 10 of 4 0.55Down
Mated spermatheca9 ± 20 of 4 0.48Down
Adult carcass14 ± 21 of 4 0.70None
Larval CNS31 ± 24 of 4 1.53Up
Larval Salivary gland16 ± 23 of 4 0.82None
Larval midgut3 ± 10 of 4 0.18Down
Larval tubule13 ± 03 of 4 0.70Down
Larval hindgut11 ± 12 of 4 0.54Down
Larval fat body11 ± 31 of 4 0.60None
Larval trachea18 ± 44 of 4 0.93None
Larval carcass13 ± 20 of 4 0.65Down
S2 cells (growing)28 ± 14 of 4 1.42Up
Whole fly20 ± 14 of 4

Looking for FBgn0004367. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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