Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004369 through 18771 annotations produced 5 hits



Protein tyrosine phosphatase 99A (Ptp99A):

Annotation Number : CG2005
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004369
Gbrowse : chr3R:25287534-25310461 (+) // 100.0 //
Probeset : 1632003_a_at
Accessions : protein= NP_001014683; /// NP_476816; /// NP_651691; /// NP_733288; /// NP_996302;, nucleotide= NM_001014683; /// NM_001014683; /// NM_057468; /// NM_057468; /// NM_143434; /// NM_170409; /// NM_170409; /// NM_206579; /// NM_206579;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from sequence or str
Interpro : 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine ph
FlyMine data for FBgn0004369.
Homophila reports that CG2005 is a close match (2e-42) to human gene LYP;PEP;PTPN22;PTPN8 (NP_036543), a gene associated with {Diabetes mellitus, insulin-dependent, susceptibility to}, 222100 (3);{Rheumatoid arthritis, susceptibility to}, 180300 (3);{Systemic lupus erythematosus, susceptibility to}, 152700 (3).
TRiP has 2 RNAi stocks for FBgn0004369 available for purchase.
VDRC has 7 RNAi stocks for FBgn0004369 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain49 14 of 4 0.70Down
Head40 54 of 4 0.60Down
Eye16 14 of 4 0.25Down
Thoracicoabdominal ganglion47 44 of 4 0.70Down
Salivary gland58 44 of 4 0.89None
Crop76 44 of 4 1.20None
Midgut39 14 of 4 0.60Down
Tubule58 24 of 4 0.90Down
Hindgut60 14 of 4 0.90None
Heart35 24 of 4 0.54Down
Fat body55 84 of 4 0.84None
Ovary102 34 of 4 1.60Up
Testis12 04 of 4 0.20Down
Male accessory glands108 34 of 4 1.60Up
Virgin spermatheca36 24 of 4 0.56Down
Mated spermatheca38 24 of 4 0.58Down
Adult carcass67 54 of 4 1.00None
Larval CNS55 34 of 4 0.84None
Larval Salivary gland42 24 of 4 0.65Down
Larval midgut27 14 of 4 0.41Down
Larval tubule39 24 of 4 0.60Down
Larval hindgut41 04 of 4 0.63Down
Larval fat body36 24 of 4 0.60Down
Larval trachea19 24 of 4 0.30Down
Larval carcass36 64 of 4 0.56Down
S2 cells (growing)122 34 of 4 1.87Up
Whole fly65 34 of 4



Protein tyrosine phosphatase 99A (Ptp99A):

Annotation Number : CG11517
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004369
Gbrowse : chr3R:25256446-25256973 (+) // 100.0 //
Probeset : 1624710_at
Accessions : protein= NP_001014683; /// NP_476816; /// NP_651691; /// NP_733288; /// NP_996302;, nucleotide= NM_001014683; /// NM_001014683; /// NM_057468; /// NM_057468; /// NM_143434; /// NM_170409; /// NM_170409; /// NM_206579; /// NM_206579;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from sequence or str
Interpro : 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine ph
FlyMine data for FBgn0004369.
Homophila reports that CG11517 is a close match (1e-13) to human gene ROBO3;RBIG1;RIG1;HGPPS (NP_071765), a gene associated with Gaze palsy, horizontal, with progressive scoliosis, 607313 (3).
TRiP has 2 RNAi stocks for FBgn0004369 available for purchase.
VDRC has 7 RNAi stocks for FBgn0004369 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 12 of 4 2.00None
Head6 10 of 4 1.40None
Eye7 11 of 4 1.72None
Thoracicoabdominal ganglion9 10 of 4 2.10Up
Salivary gland13 40 of 4 2.90None
Crop4 10 of 4 0.90None
Midgut7 00 of 4 1.60None
Tubule6 00 of 4 1.30Up
Hindgut5 10 of 4 1.20None
Heart4 10 of 4 0.96None
Fat body10 20 of 4 2.25Up
Ovary3 10 of 4 0.80None
Testis2 00 of 4 0.50None
Male accessory glands10 10 of 4 2.30Up
Virgin spermatheca8 11 of 4 1.82None
Mated spermatheca6 10 of 4 1.46None
Adult carcass10 20 of 4 2.30None
Larval CNS4 11 of 4 1.07None
Larval Salivary gland8 10 of 4 1.84None
Larval midgut6 21 of 4 1.31None
Larval tubule6 00 of 4 1.40None
Larval hindgut6 10 of 4 1.41None
Larval fat body7 30 of 4 1.60None
Larval trachea3 10 of 4 0.76None
Larval carcass9 10 of 4 2.08Up
S2 cells (growing)0 00 of 4 0.18None
Whole fly4 10 of 4



Protein tyrosine phosphatase 99A (Ptp99A):

Annotation Number : CG2005
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004369
Gbrowse : chr3R:25283290-25312853 (+) // 100.0 //
Probeset : 1637204_at
Accessions : protein= NP_001014683; /// NP_476816; /// NP_651691; /// NP_733288; /// NP_996302;, nucleotide= NM_001014683; /// NM_001014683; /// NM_057468; /// NM_057468; /// NM_143434; /// NM_170409; /// NM_170409; /// NM_206579; /// NM_206579;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from sequence or str
Interpro : 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine ph
FlyMine data for FBgn0004369.
Homophila reports that CG2005 is a close match (2e-42) to human gene LYP;PEP;PTPN22;PTPN8 (NP_036543), a gene associated with {Diabetes mellitus, insulin-dependent, susceptibility to}, 222100 (3);{Rheumatoid arthritis, susceptibility to}, 180300 (3);{Systemic lupus erythematosus, susceptibility to}, 152700 (3).
TRiP has 2 RNAi stocks for FBgn0004369 available for purchase.
VDRC has 7 RNAi stocks for FBgn0004369 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain806 494 of 423.30Up
Head165 94 of 4 4.80Up
Eye252 74 of 4 7.31Up
Thoracicoabdominal ganglion549 204 of 415.90Up
Salivary gland72 24 of 4 2.10Up
Crop94 54 of 4 2.70Up
Midgut23 14 of 4 0.70None
Tubule23 14 of 4 0.70Down
Hindgut70 44 of 4 2.10Up
Heart66 64 of 4 1.93Up
Fat body28 44 of 4 0.83None
Ovary5 02 of 4 0.20Down
Testis6 00 of 4 0.20Down
Male accessory glands126 124 of 4 3.70Up
Virgin spermatheca80 74 of 4 2.33Up
Mated spermatheca77 64 of 4 2.25Up
Adult carcass50 54 of 4 1.50None
Larval CNS450 554 of 413.05Up
Larval Salivary gland24 34 of 4 0.71None
Larval midgut18 14 of 4 0.53None
Larval tubule29 24 of 4 0.90None
Larval hindgut35 14 of 4 1.02None
Larval fat body31 24 of 4 0.90None
Larval trachea68 154 of 4 1.99Up
Larval carcass32 64 of 4 0.95None
S2 cells (growing)29 14 of 4 0.86None
Whole fly34 54 of 4



Protein tyrosine phosphatase 99A (Ptp99A):

Annotation Number : CG11516
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004369
Gbrowse : chr3R:25252423-25254477 (+) // 100.0 //
Probeset : 1628770_at
Accessions : protein= NP_001014683; /// NP_476816; /// NP_651691; /// NP_733288; /// NP_996302;, nucleotide= NM_001014683; /// NM_001014683; /// NM_057468; /// NM_057468; /// NM_143434; /// NM_170409; /// NM_170409; /// NM_206579; /// NM_206579;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from sequence or str
Interpro : 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine ph
FlyMine data for FBgn0004369.
BioGrid reports that CG11516 interacts with CG10975 CG10975 .
TRiP has 2 RNAi stocks for FBgn0004369 available for purchase.
VDRC has 7 RNAi stocks for FBgn0004369 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 14 of 4 2.20None
Head5 11 of 4 1.10None
Eye9 12 of 4 1.71None
Thoracicoabdominal ganglion7 03 of 4 1.40None
Salivary gland2 00 of 4 0.53None
Crop7 20 of 4 1.40None
Midgut12 13 of 4 2.40Up
Tubule6 11 of 4 1.20None
Hindgut7 11 of 4 1.30None
Heart6 00 of 4 1.25None
Fat body7 21 of 4 1.41None
Ovary3 00 of 4 0.70None
Testis5 10 of 4 0.90None
Male accessory glands5 10 of 4 1.00None
Virgin spermatheca3 00 of 4 0.66None
Mated spermatheca5 00 of 4 1.07None
Adult carcass6 10 of 4 1.10None
Larval CNS4 22 of 4 0.79None
Larval Salivary gland8 12 of 4 1.61None
Larval midgut12 34 of 4 2.40None
Larval tubule4 10 of 4 0.80None
Larval hindgut6 12 of 4 1.21None
Larval fat body4 11 of 4 0.80None
Larval trachea2 30 of 4 0.56None
Larval carcass5 10 of 4 0.97None
S2 cells (growing)4 00 of 4 0.78None
Whole fly5 22 of 4



Protein tyrosine phosphatase 99A (Ptp99A):

Annotation Number : CT35612
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004369
Gbrowse : chr3R:25242176-25242855 (+) // 100.0 //
Probeset : 1630017_at
Accessions : protein= NP_001014683; /// NP_476816; /// NP_651691; /// NP_733288; /// NP_996302;, nucleotide= NM_001014683; /// NM_001014683; /// NM_057468; /// NM_057468; /// NM_143434; /// NM_170409; /// NM_170409; /// NM_206579; /// NM_206579;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from sequence or str
Interpro : 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004725 // protein tyrosine ph
FlyMine data for FBgn0004369.
TRiP has 2 RNAi stocks for FBgn0004369 available for purchase.
VDRC has 7 RNAi stocks for FBgn0004369 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 12 of 4 4.00Up
Head4 10 of 4 1.90None
Eye3 10 of 4 1.39None
Thoracicoabdominal ganglion6 00 of 4 2.90Up
Salivary gland13 21 of 4 6.02Up
Crop10 01 of 4 4.60Up
Midgut4 10 of 4 1.80None
Tubule4 10 of 4 1.90None
Hindgut3 10 of 4 1.70None
Heart5 20 of 4 2.35None
Fat body1 00 of 4 0.61None
Ovary2 10 of 4 1.10None
Testis3 10 of 4 1.70None
Male accessory glands8 21 of 4 3.90None
Virgin spermatheca2 10 of 4 1.27None
Mated spermatheca2 10 of 4 1.23None
Adult carcass8 40 of 4 3.80None
Larval CNS4 10 of 4 1.95Up
Larval Salivary gland3 10 of 4 1.47None
Larval midgut5 20 of 4 2.39None
Larval tubule4 10 of 4 2.10None
Larval hindgut2 10 of 4 1.25None
Larval fat body4 10 of 4 2.20None
Larval trachea2 20 of 4 1.24None
Larval carcass6 10 of 4 2.89None
S2 cells (growing)3 11 of 4 1.57None
Whole fly2 00 of 4

Looking for FBgn0004369. 5 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime