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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004379 through 18771 annotations produced 1 hits



kinesin like protein 67a (Klp67A):

Annotation Number : CG10923
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004379
Gbrowse : chr3L:9355730-9360040 (-) // 100.0 //
Probeset : 1631630_at
Accessions : protein= NP_523992;, nucleotide= NM_079268;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005871 // k
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from dire
FlyMine data for FBgn0004379.
BDGP gene expression has embryonic in situ data for Klp67A: 12 pix of staining in 10 body parts.
Homophila reports that CG10923 is a close match (9e-46) to human gene KIF5A;NKHC;SPG10 (NP_004975), a gene associated with Spastic paraplegia 10, 604187 (3).
TRiP has 3 RNAi stocks for FBgn0004379 available for purchase.
VDRC has 3 RNAi stocks for FBgn0004379 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 10 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye2 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion6 ± 20 of 4 0.10Down
Salivary gland8 ± 40 of 4 0.06Down
Crop4 ± 20 of 4 0.00Down
Midgut3 ± 00 of 4 0.00Down
Tubule6 ± 10 of 4 0.10Down
Hindgut2 ± 00 of 4 0.00Down
Heart1 ± 00 of 4 0.01Down
Fat body5 ± 40 of 4 0.04Down
Ovary395 ± 54 of 4 3.00Up
Testis225 ± 54 of 4 1.70Up
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca9 ± 20 of 4 0.07Down
Mated spermatheca8 ± 30 of 4 0.07Down
Adult carcass7 ± 20 of 4 0.10Down
Larval CNS250 ± 114 of 4 1.90Up
Larval Salivary gland11 ± 30 of 4 0.09Down
Larval midgut3 ± 00 of 4 0.03Down
Larval tubule7 ± 20 of 4 0.10Down
Larval hindgut10 ± 20 of 4 0.08Down
Larval fat body38 ± 212 of 4 0.30Down
Larval trachea31 ± 54 of 4 0.24Down
Larval carcass23 ± 10 of 4 0.18Down
S2 cells (growing)258 ± 84 of 4 1.97Up
Whole fly131 ± 64 of 4

Looking for FBgn0004379. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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