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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004387 through 18771 annotations produced 1 hits



Kinesin-like protein at 98A (Klp98A):

Annotation Number : CG5658
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004387
Gbrowse : chr3R:23373495-23384836 (-) // 100.0 //
Probeset : 1634306_at
Accessions : protein= NP_524532;, nucleotide= NM_079808;
Pathway : 0005871 // kinesin complex // inferred from sequence or structural similarity /// 0005874 // microtubule // inferred fro
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from elec
FlyMine data for FBgn0004387.
Homophila reports that CG5658 is a close match (2e-49) to human gene KIF5A;NKHC;SPG10 (NP_004975), a gene associated with Spastic paraplegia 10, 604187 (3).
TRiP has 1 RNAi stocks for FBgn0004387 available for purchase.
VDRC has 2 RNAi stocks for FBgn0004387 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain271 ± 24 of 4 2.50Up
Head162 ± 184 of 4 1.50Up
Eye252 ± 334 of 4 2.34Up
Thoracicoabdominal ganglion180 ± 84 of 4 1.70Up
Salivary gland224 ± 64 of 4 2.09Up
Crop249 ± 94 of 4 2.30Up
Midgut78 ± 44 of 4 0.70Down
Tubule323 ± 174 of 4 3.00Up
Hindgut185 ± 84 of 4 1.70Up
Heart408 ± 324 of 4 3.80Up
Fat body187 ± 154 of 4 1.74Up
Ovary168 ± 44 of 4 1.60Up
Testis12 ± 24 of 4 0.10Down
Male accessory glands105 ± 44 of 4 1.00None
Virgin spermatheca227 ± 94 of 4 2.12Up
Mated spermatheca204 ± 44 of 4 1.90Up
Adult carcass107 ± 74 of 4 1.00None
Larval CNS176 ± 204 of 4 1.64Up
Larval Salivary gland187 ± 34 of 4 1.74Up
Larval midgut134 ± 174 of 4 1.25None
Larval tubule369 ± 304 of 4 3.40Up
Larval hindgut200 ± 114 of 4 1.86Up
Larval fat body190 ± 124 of 4 1.80Up
Larval trachea164 ± 94 of 4 1.53Up
Larval carcass239 ± 174 of 4 2.23Up
S2 cells (growing)81 ± 54 of 4 0.76Down
Whole fly107 ± 74 of 4

Looking for FBgn0004387. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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