Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004389 through 18771 annotations produced 1 hits



chr3R:27018945-27020517 (+) // 100.0 // (bottleneck):

Annotation Number : CG1480
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1626655_at
Accessions : protein= , nucleotide= NP_524604;
Pathway : "0000915 // cytokinesis
Interpro : actomyosin contractile ring assembly // non-traceable author statement /// 0007015 // actin filament organization // no
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 12 of 4 1.70None
Head2 ± 11 of 4 0.80None
Eye2 ± 10 of 4 0.77None
Thoracicoabdominal ganglion3 ± 00 of 4 1.00None
Salivary gland12 ± 30 of 4 3.69None
Crop8 ± 22 of 4 2.70None
Midgut7 ± 13 of 4 2.10None
Tubule3 ± 00 of 4 1.10None
Hindgut3 ± 10 of 4 1.20None
Heart2 ± 00 of 4 0.82None
Fat body7 ± 33 of 4 2.26None
Ovary2 ± 01 of 4 0.80None
Testis1 ± 00 of 4 0.50None
Male accessory glands10 ± 21 of 4 3.20Up
Virgin spermatheca3 ± 10 of 4 0.98None
Mated spermatheca6 ± 13 of 4 1.82None
Adult carcass12 ± 32 of 4 3.70None
Larval CNS3 ± 12 of 4 1.08None
Larval Salivary gland4 ± 10 of 4 1.37None
Larval midgut8 ± 13 of 4 2.39None
Larval tubule6 ± 12 of 4 2.00None
Larval hindgut4 ± 00 of 4 1.22None
Larval fat body2 ± 00 of 4 0.80None
Larval trachea1 ± 10 of 4 0.54None
Larval carcass3 ± 00 of 4 0.93None
S2 cells (growing)4 ± 11 of 4 1.44None
Whole fly3 ± 11 of 4

Looking for FBgn0004389. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime