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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004395 through 18771 annotations produced 2 hits



unkempt (unk):

Annotation Number : CG4620
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004395
Gbrowse : chr3R:18978759-18983592 (-) // 100.0 //
Probeset : 1641033_a_at
Accessions : protein= NP_788722; /// NP_788723;, nucleotide= NM_176545; /// NM_176546;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // non-traceable autho
FlyMine data for FBgn0004395.
VDRC has 2 RNAi stocks for FBgn0004395 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain23 24 of 4 0.60Down
Head12 24 of 4 0.30Down
Eye4 21 of 4 0.13Down
Thoracicoabdominal ganglion12 13 of 4 0.30Down
Salivary gland23 23 of 4 0.64Down
Crop17 24 of 4 0.50Down
Midgut13 14 of 4 0.40Down
Tubule8 02 of 4 0.20Down
Hindgut24 14 of 4 0.70Down
Heart5 02 of 4 0.14Down
Fat body19 64 of 4 0.53Down
Ovary110 44 of 4 3.10Up
Testis6 04 of 4 0.20Down
Male accessory glands27 24 of 4 0.80Down
Virgin spermatheca10 04 of 4 0.28Down
Mated spermatheca12 14 of 4 0.35Down
Adult carcass12 23 of 4 0.30Down
Larval CNS68 74 of 4 1.90Up
Larval Salivary gland27 44 of 4 0.76None
Larval midgut19 34 of 4 0.54Down
Larval tubule31 14 of 4 0.90None
Larval hindgut33 14 of 4 0.92None
Larval fat body30 34 of 4 0.80None
Larval trachea10 14 of 4 0.29Down
Larval carcass23 14 of 4 0.64Down
S2 cells (growing)65 64 of 4 1.81Up
Whole fly36 24 of 4



unkempt (unk):

Annotation Number : CG4620
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004395
Gbrowse : chr3R:18977285-18983592 (-) // 99.74 //
Probeset : 1633020_at
Accessions : protein= NP_788722; /// NP_788723;, nucleotide= NM_176545; /// NM_176546;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // non-traceable autho
FlyMine data for FBgn0004395.
VDRC has 2 RNAi stocks for FBgn0004395 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain407 134 of 415.60Up
Head75 64 of 4 2.90Up
Eye210 194 of 4 8.08Up
Thoracicoabdominal ganglion275 114 of 410.60Up
Salivary gland71 84 of 4 2.76Up
Crop113 144 of 4 4.30Up
Midgut43 34 of 4 1.70Up
Tubule42 34 of 4 1.60Up
Hindgut65 64 of 4 2.50Up
Heart63 24 of 4 2.45Up
Fat body45 94 of 4 1.76Up
Ovary15 04 of 4 0.60Down
Testis9 14 of 4 0.40Down
Male accessory glands52 24 of 4 2.00Up
Virgin spermatheca169 94 of 4 6.50Up
Mated spermatheca228 294 of 4 8.75Up
Adult carcass28 24 of 4 1.10None
Larval CNS451 374 of 417.34Up
Larval Salivary gland80 94 of 4 3.08Up
Larval midgut33 44 of 4 1.29None
Larval tubule137 104 of 4 5.30Up
Larval hindgut52 24 of 4 2.00Up
Larval fat body131 174 of 4 5.10Up
Larval trachea205 294 of 4 7.88Up
Larval carcass73 64 of 4 2.84Up
S2 cells (growing)105 14 of 4 4.06Up
Whole fly26 04 of 4

Looking for FBgn0004395. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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