FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0004396 through 18771 annotations produced 2 hits

Box B-binding factor 2 (CrebA):

Annotation Number : CG7450
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004396
Gbrowse : chr3L:15528513-15546314 (+) // 100.0 //
Probeset : 1627571_at
Accessions : protein= NP_524087; /// NP_996096;, nucleotide= NM_079363; /// NM_206374;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005634 //
FlyMine data for FBgn0004396.
BDGP gene expression has embryonic in situ data for CrebA: 27 pix of staining in 26 body parts.
TRiP has 3 RNAi stocks for FBgn0004396 available for purchase.
VDRC has 1 RNAi stocks for FBgn0004396 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	37 ± 3	4 of 4	0.50	Down
Head	95 ± 4	4 of 4	1.20	None
Eye	46 ± 1	4 of 4	0.59	None
Thoracicoabdominal ganglion	36 ± 3	4 of 4	0.50	Down
Salivary gland	927 ± 34	4 of 4	11.72	Up
Crop	95 ± 6	4 of 4	1.20	None
Midgut	188 ± 15	4 of 4	2.40	Up
Tubule	96 ± 7	4 of 4	1.20	Up
Hindgut	91 ± 1	4 of 4	1.20	None
Heart	74 ± 3	4 of 4	0.94	None
Fat body	289 ± 29	4 of 4	3.66	Up
Ovary	39 ± 5	4 of 4	0.50	Down
Testis	37 ± 1	4 of 4	0.50	Down
Male accessory glands	873 ± 27	4 of 4	11.00	Up
Virgin spermatheca	428 ± 60	4 of 4	5.41	Up
Mated spermatheca	571 ± 25	4 of 4	7.23	Up
Adult carcass	70 ± 6	4 of 4	0.90	None
Larval CNS	58 ± 13	4 of 4	0.74	None
Larval Salivary gland	1953 ± 164	4 of 4	24.69	Up
Larval midgut	242 ± 17	4 of 4	3.06	Up
Larval tubule	80 ± 8	4 of 4	1.00	None
Larval hindgut	209 ± 5	4 of 4	2.65	Up
Larval fat body	154 ± 15	4 of 4	1.90	Up
Larval trachea	132 ± 21	4 of 4	1.67	Up
Larval carcass	267 ± 33	4 of 4	3.38	Up
S2 cells (growing)	271 ± 16	4 of 4	3.43	Up
Whole fly	79 ± 10	4 of 4

Box B-binding factor 2 (CrebA):

Annotation Number : HDC10294
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr3L:15525560-15525836 (+) // 92.31 //
Probeset : 1626210_at
Accessions : protein= NP_524087; /// NP_996096;, nucleotide= NM_079363; /// NM_206374;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005634 //

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 1	0 of 4	1.10	None
Head	4 ± 1	2 of 4	1.80	None
Eye	1 ± 0	0 of 4	0.52	None
Thoracicoabdominal ganglion	1 ± 0	0 of 4	0.50	None
Salivary gland	12 ± 2	0 of 4	5.04	Up
Crop	5 ± 1	0 of 4	2.30	None
Midgut	3 ± 1	0 of 4	1.30	None
Tubule	5 ± 0	0 of 4	2.20	Up
Hindgut	4 ± 1	1 of 4	1.70	None
Heart	3 ± 1	0 of 4	1.18	None
Fat body	7 ± 6	1 of 4	2.77	None
Ovary	0 ± 0	0 of 4	0.30	None
Testis	1 ± 0	0 of 4	0.50	None
Male accessory glands	4 ± 1	0 of 4	1.60	None
Virgin spermatheca	6 ± 1	2 of 4	2.55	None
Mated spermatheca	7 ± 2	1 of 4	2.91	None
Adult carcass	6 ± 2	0 of 4	2.40	None
Larval CNS	5 ± 1	3 of 4	2.33	Up
Larval Salivary gland	2 ± 0	0 of 4	0.95	None
Larval midgut	1 ± 0	0 of 4	0.50	None
Larval tubule	2 ± 0	1 of 4	1.10	None
Larval hindgut	2 ± 1	0 of 4	0.92	None
Larval fat body	6 ± 1	0 of 4	2.60	None
Larval trachea	2 ± 2	0 of 4	0.87	None
Larval carcass	1 ± 0	0 of 4	0.66	None
S2 cells (growing)	1 ± 0	0 of 4	0.48	None
Whole fly	2 ± 0	1 of 4

Looking for FBgn0004396. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720