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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004400 through 18771 annotations produced 1 hits



rhino (rhi):

Annotation Number : CG10683
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004400
Gbrowse : chr2R:13515993-13521017 (-) // 100.0 //
Probeset : 1625083_at
Accessions : protein= NP_536794;, nucleotide= NM_080533;
Pathway : 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structur
Interpro : 0003682 // chromatin binding // inferred from sequence or structural similarity /// 0003682 // chromatin binding // infe
FlyMine data for FBgn0004400.
BDGP gene expression has embryonic in situ data for rhi: 24 pix of staining in 7 body parts.
BioGrid reports that CG10683 interacts with CG15116 CG2241 CG2678 CG3929 CG4832 CG10683 CG14868 CG16721 CG17826 CG3250 CG32809 CG5023 CG9797 .
TRiP has 2 RNAi stocks for FBgn0004400 available for purchase.
VDRC has 1 RNAi stocks for FBgn0004400 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.00Down
Head5 00 of 4 0.10Down
Eye5 10 of 4 0.05Down
Thoracicoabdominal ganglion2 00 of 4 0.00Down
Salivary gland5 20 of 4 0.05Down
Crop3 10 of 4 0.00Down
Midgut3 10 of 4 0.00Down
Tubule3 10 of 4 0.00Down
Hindgut3 00 of 4 0.00Down
Heart2 10 of 4 0.03Down
Fat body9 31 of 4 0.09Down
Ovary274 54 of 4 2.70Up
Testis14 14 of 4 0.10Down
Male accessory glands10 31 of 4 0.10Down
Virgin spermatheca4 10 of 4 0.04Down
Mated spermatheca6 00 of 4 0.06Down
Adult carcass7 30 of 4 0.10Down
Larval CNS4 21 of 4 0.05Down
Larval Salivary gland4 10 of 4 0.05Down
Larval midgut2 00 of 4 0.03Down
Larval tubule2 10 of 4 0.00Down
Larval hindgut4 00 of 4 0.04Down
Larval fat body7 31 of 4 0.10Down
Larval trachea0 00 of 4 0.01Down
Larval carcass1 00 of 4 0.02Down
S2 cells (growing)6 01 of 4 0.07Down
Whole fly100 54 of 4

Looking for FBgn0004400. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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