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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004403 through 18771 annotations produced 1 hits



Ribosomal protein S14a (RpS14a):

Annotation Number : CG1524
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004403
Gbrowse : chrX:7827778-7828713 (+) // 100.0 //
Probeset : 1624564_s_at
Accessions : protein= NP_524884; /// NP_727218;, nucleotide= NM_080145; /// NM_167137;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct as
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0004403.
BDGP gene expression has embryonic in situ data for RpS14a: 4 pix of staining in 1 body parts.
BioGrid reports that CG1524 interacts with CG8816 CG16890 CG30115 CG32354 CG5053 CG7146 CG9117 CG33275 .
VDRC has 1 RNAi stocks for FBgn0004403 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2651 544 of 4 0.90None
Head3407 1614 of 4 1.10None
Eye5494 944 of 4 1.81Up
Thoracicoabdominal ganglion3606 804 of 4 1.20Up
Salivary gland7813 3154 of 4 2.58Up
Crop4463 2214 of 4 1.50Up
Midgut3971 884 of 4 1.30Up
Tubule4519 614 of 4 1.50Up
Hindgut3829 614 of 4 1.30Up
Heart5322 2914 of 4 1.75Up
Fat body6052 6244 of 4 2.00Up
Ovary2785 464 of 4 0.90None
Testis705 334 of 4 0.20Down
Male accessory glands6168 2134 of 4 2.00Up
Virgin spermatheca5169 4474 of 4 1.70Up
Mated spermatheca5424 1784 of 4 1.79Up
Adult carcass4102 1944 of 4 1.40Up
Larval CNS2829 2044 of 4 0.93None
Larval Salivary gland6279 2474 of 4 2.07Up
Larval midgut3810 1214 of 4 1.26Up
Larval tubule3818 734 of 4 1.30Up
Larval hindgut4354 414 of 4 1.44Up
Larval fat body5717 7324 of 4 1.90Up
Larval trachea4725 1564 of 4 1.56Up
Larval carcass4101 2174 of 4 1.35Up
S2 cells (growing)4009 434 of 4 1.32Up
Whole fly3033 1504 of 4

Looking for FBgn0004403. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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