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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004406 through 18771 annotations produced 1 hits



DNA polymerase gamma (tam):

Annotation Number : CG8987
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004406
Gbrowse : chr2L:13823979-13827793 (-) // 100.0 //
Probeset : 1637860_at
Accessions : protein= NP_476821;, nucleotide= NM_057473;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // non-traceabl
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003887 // DNA-directed DNA polymerase activity // inf
FlyMine data for FBgn0004406.
Homophila reports that CG8987 is a close match (0) to human gene PEO;POLG;POLG1;POLGA;SANDO;SCAE (NP_002684), a gene associated with Alpers syndrome, 203700 (3);Progressive external ophthalmoplegia with mitochondrial DNA deletions, 157640 (3);Sensory ataxic neuropathy, dysarthria, and ophthalmoparesis, 607459 (3);Spinocerebellar ataxia with epilepsy, 607459 (3).
TRiP has 2 RNAi stocks for FBgn0004406 available for purchase.
VDRC has 3 RNAi stocks for FBgn0004406 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 00 of 4 0.30Down
Head13 11 of 4 0.30Down
Eye10 12 of 4 0.23Down
Thoracicoabdominal ganglion13 10 of 4 0.30Down
Salivary gland33 60 of 4 0.74None
Crop17 10 of 4 0.40Down
Midgut19 23 of 4 0.40Down
Tubule24 03 of 4 0.50Down
Hindgut16 10 of 4 0.40Down
Heart14 24 of 4 0.33Down
Fat body14 30 of 4 0.32Down
Ovary82 34 of 4 1.80Up
Testis40 34 of 4 0.90None
Male accessory glands29 23 of 4 0.60Down
Virgin spermatheca14 21 of 4 0.33Down
Mated spermatheca20 22 of 4 0.44Down
Adult carcass23 21 of 4 0.50Down
Larval CNS40 44 of 4 0.90None
Larval Salivary gland33 43 of 4 0.73None
Larval midgut15 21 of 4 0.35Down
Larval tubule21 14 of 4 0.50Down
Larval hindgut35 34 of 4 0.78None
Larval fat body22 10 of 4 0.50Down
Larval trachea38 84 of 4 0.84None
Larval carcass23 22 of 4 0.51Down
S2 cells (growing)99 54 of 4 2.19Up
Whole fly45 34 of 4

Looking for FBgn0004406. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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