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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004407 through 18771 annotations produced 1 hits



/// accessory subunit of mitochondrial DNA polymerase (CG33649 /// DNApol-gamma35):

Annotation Number : CG33084
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004407 /// FBgn0064115
Gbrowse : chr2L:13831479-13833167 (-) // 100.0 //
Probeset : 1637875_a_at
Accessions : protein= NP_001027262; /// NP_001027263;, nucleotide= NM_001032091; /// NM_001032092;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from physical inter
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003887 // DNA-directed DNA polymerase activity
FlyMine data for FBgn0004407 /// FBgn0064115.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain178 14 of 4 2.30Up
Head113 24 of 4 1.50Up
Eye160 64 of 4 2.10Up
Thoracicoabdominal ganglion224 114 of 4 2.90Up
Salivary gland136 84 of 4 1.78Up
Crop116 34 of 4 1.50Up
Midgut66 34 of 4 0.90None
Tubule159 64 of 4 2.10Up
Hindgut120 14 of 4 1.60Up
Heart109 24 of 4 1.43Up
Fat body68 54 of 4 0.90None
Ovary82 54 of 4 1.10None
Testis86 44 of 4 1.10None
Male accessory glands110 64 of 4 1.40Up
Virgin spermatheca111 74 of 4 1.45Up
Mated spermatheca134 34 of 4 1.75Up
Adult carcass71 44 of 4 0.90None
Larval CNS201 64 of 4 2.63Up
Larval Salivary gland127 74 of 4 1.67Up
Larval midgut75 64 of 4 0.98None
Larval tubule81 34 of 4 1.10None
Larval hindgut123 54 of 4 1.62Up
Larval fat body74 54 of 4 1.00None
Larval trachea123 64 of 4 1.61Up
Larval carcass94 64 of 4 1.23None
S2 cells (growing)90 34 of 4 1.18Up
Whole fly76 34 of 4

Looking for FBgn0004407. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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