FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0004429 through 18771 annotations produced 1 hits

lysozyme (LysP):

Annotation Number : CG9116
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004429
Gbrowse : chr3L:1218009-1218696 (-) // 100.0 //
Probeset : 1636767_at
Accessions : protein= NP_476828;, nucleotide= NM_057480;
Interpro : "0003796 // lysozyme activity // inferred from electronic annotation /// 0003796 // lysozyme activity // inferred from s
FlyMine data for FBgn0004429.
Homophila reports that CG9116 is a close match (1e-21) to human gene LYZ (NP_000230), a gene associated with Amyloidosis, renal, 105200 (3).
VDRC has 4 RNAi stocks for FBgn0004429 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 0	0 of 4	0.00	Down
Head	53 ± 16	4 of 4	0.30	Down
Eye	1 ± 0	0 of 4	0.01	Down
Thoracicoabdominal ganglion	246 ± 142	3 of 4	1.40	None
Salivary gland	22860 ± 1391	4 of 4	126.63	Up
Crop	82 ± 23	4 of 4	0.50	None
Midgut	9 ± 2	0 of 4	0.10	Down
Tubule	5 ± 3	0 of 4	0.00	Down
Hindgut	0 ± 0	0 of 4	0.00	Down
Heart	1 ± 0	0 of 4	0.01	Down
Fat body	17 ± 28	1 of 4	0.10	Down
Ovary	0 ± 0	0 of 4	0.00	Down
Testis	1 ± 0	0 of 4	0.00	Down
Male accessory glands	5 ± 1	0 of 4	0.00	Down
Virgin spermatheca	0 ± 0	0 of 4	0.00	Down
Mated spermatheca	0 ± 0	0 of 4	0.00	Down
Adult carcass	291 ± 58	4 of 4	1.60	None
Larval CNS	0 ± 0	0 of 4	0.00	Down
Larval Salivary gland	319 ± 48	4 of 4	1.77	None
Larval midgut	26 ± 5	0 of 4	0.15	Down
Larval tubule	1 ± 1	0 of 4	0.00	Down
Larval hindgut	1 ± 0	0 of 4	0.01	Down
Larval fat body	2 ± 1	0 of 4	0.00	Down
Larval trachea	1 ± 1	0 of 4	0.01	Down
Larval carcass	1 ± 0	0 of 4	0.01	Down
S2 cells (growing)	0 ± 0	0 of 4	0.01	Down
Whole fly	180 ± 32	4 of 4

Looking for FBgn0004429. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720