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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004465 through 18771 annotations produced 1 hits



Suppressor of ref(2)P sterility (Su(P)):

Annotation Number : CG4086
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004465
Gbrowse : chr3L:16603754-16605297 (-) // 100.0 //
Probeset : 1635950_at
Accessions : protein= NP_524116;, nucleotide= NM_079392;
Interpro : 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreduct
FlyMine data for FBgn0004465.
BDGP gene expression has embryonic in situ data for Su(P): 9 pix of staining in 13 body parts.
BioGrid reports that CG4086 interacts with CG10360 .
TRiP has 2 RNAi stocks for FBgn0004465 available for purchase.
VDRC has 3 RNAi stocks for FBgn0004465 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain229 ± 54 of 4 1.30None
Head164 ± 44 of 4 0.90None
Eye182 ± 94 of 4 1.03None
Thoracicoabdominal ganglion235 ± 144 of 4 1.30None
Salivary gland228 ± 94 of 4 1.28None
Crop141 ± 24 of 4 0.80None
Midgut126 ± 34 of 4 0.70None
Tubule208 ± 84 of 4 1.20Up
Hindgut288 ± 24 of 4 1.60Up
Heart199 ± 74 of 4 1.12None
Fat body143 ± 154 of 4 0.81None
Ovary251 ± 114 of 4 1.40None
Testis58 ± 64 of 4 0.30Down
Male accessory glands171 ± 174 of 4 1.00None
Virgin spermatheca147 ± 54 of 4 0.83None
Mated spermatheca148 ± 114 of 4 0.84None
Adult carcass185 ± 84 of 4 1.00None
Larval CNS280 ± 214 of 4 1.58Up
Larval Salivary gland184 ± 64 of 4 1.04None
Larval midgut145 ± 24 of 4 0.82None
Larval tubule163 ± 74 of 4 0.90None
Larval hindgut237 ± 134 of 4 1.34None
Larval fat body120 ± 94 of 4 0.70None
Larval trachea185 ± 304 of 4 1.04None
Larval carcass176 ± 164 of 4 0.99None
S2 cells (growing)213 ± 64 of 4 1.20None
Whole fly177 ± 244 of 4

Looking for FBgn0004465. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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