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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004511 through 18771 annotations produced 1 hits



dusky (dy):

Annotation Number : CG9355
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004511
Gbrowse : chrX:11663805-11672709 (-) // 100.0 //
Probeset : 1633291_at
Accessions : protein= NP_511130;, nucleotide= NM_078575;
Pathway : 0005886 // plasma membrane // non-traceable author statement /// 0016021 // integral to membrane // inferred from sequen
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity
FlyMine data for FBgn0004511.
TRiP has 1 RNAi stocks for FBgn0004511 available for purchase.
VDRC has 3 RNAi stocks for FBgn0004511 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 13 of 4 1.10None
Head14 ± 24 of 4 1.70None
Eye29 ± 163 of 4 3.50None
Thoracicoabdominal ganglion7 ± 11 of 4 0.90None
Salivary gland18 ± 40 of 4 2.18None
Crop10 ± 12 of 4 1.30None
Midgut7 ± 10 of 4 0.80None
Tubule5 ± 00 of 4 0.70Down
Hindgut4 ± 10 of 4 0.60None
Heart7 ± 03 of 4 0.85None
Fat body11 ± 14 of 4 1.37None
Ovary4 ± 01 of 4 0.50None
Testis2 ± 00 of 4 0.20Down
Male accessory glands4 ± 20 of 4 0.50None
Virgin spermatheca7 ± 01 of 4 0.91None
Mated spermatheca8 ± 31 of 4 1.03None
Adult carcass5 ± 20 of 4 0.70None
Larval CNS5 ± 12 of 4 0.68None
Larval Salivary gland11 ± 32 of 4 1.32None
Larval midgut5 ± 20 of 4 0.62None
Larval tubule8 ± 11 of 4 1.00None
Larval hindgut5 ± 02 of 4 0.64None
Larval fat body8 ± 12 of 4 1.00None
Larval trachea5 ± 02 of 4 0.61None
Larval carcass7 ± 10 of 4 0.91None
S2 cells (growing)8 ± 12 of 4 0.98None
Whole fly8 ± 13 of 4

Looking for FBgn0004511. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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