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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004512 through 18771 annotations produced 1 hits



Multi drug resistance 49 (Mdr49):

Annotation Number : CG3879
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004512
Gbrowse : chr2R:8827834-8833849 (-) // 100.0 //
Probeset : 1628659_at
Accessions : protein= NP_001163132; /// NP_523724;, nucleotide= NM_001169661; /// NM_079000;
Pathway : 0005887 // integral to plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from electr
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from ph
FlyMine data for FBgn0004512.
BDGP gene expression has embryonic in situ data for Mdr49: 29 pix of staining in 8 body parts.
Homophila reports that CG3879 is a close match (2e-11) to human gene ABCG5 (NP_071881), a gene associated with Sitosterolemia, 210250 (3).
BioGrid reports that CG3879 interacts with CG7752 .
TRiP has 1 RNAi stocks for FBgn0004512 available for purchase.
VDRC has 3 RNAi stocks for FBgn0004512 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain265 94 of 4 2.40Up
Head112 74 of 4 1.00None
Eye45 44 of 4 0.41Down
Thoracicoabdominal ganglion395 134 of 4 3.60Up
Salivary gland22 40 of 4 0.20Down
Crop14 33 of 4 0.10Down
Midgut497 174 of 4 4.60Up
Tubule1450 664 of 413.40Up
Hindgut350 194 of 4 3.20Up
Heart61 84 of 4 0.57Down
Fat body22 143 of 4 0.21Down
Ovary5 10 of 4 0.00Down
Testis20 04 of 4 0.20Down
Male accessory glands1216 384 of 411.20Up
Virgin spermatheca15 12 of 4 0.15Down
Mated spermatheca19 43 of 4 0.18Down
Adult carcass194 124 of 4 1.80Up
Larval CNS40 44 of 4 0.37Down
Larval Salivary gland12 00 of 4 0.11Down
Larval midgut432 624 of 4 3.98Up
Larval tubule1559 1774 of 414.30Up
Larval hindgut239 494 of 4 2.21None
Larval fat body362 634 of 4 3.30Up
Larval trachea37 244 of 4 0.34Down
Larval carcass232 884 of 4 2.14None
S2 cells (growing)15 10 of 4 0.14Down
Whole fly108 34 of 4

Looking for FBgn0004512. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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