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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004514 through 18771 annotations produced 1 hits



honoka (TyrR):

Annotation Number : CG7485
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004514
Gbrowse : chr3L:22028455-22058381 (+) // 100.0 //
Probeset : 1627441_at
Accessions : protein= NP_001163494; /// NP_524419;, nucleotide= NM_001170023; /// NM_079695;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0004514.
Homophila reports that CG7485 is a close match (2e-11) to human gene AGTR1;AGTR1A;AT2R1 (NP_114438), a gene associated with Hypertension, essential, 145500 (3);Renal tubular dysgenesis, 267430 (3).
TRiP has 1 RNAi stocks for FBgn0004514 available for purchase.
VDRC has 2 RNAi stocks for FBgn0004514 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain127 ± 74 of 427.90Up
Head27 ± 34 of 4 6.00Up
Eye3 ± 00 of 4 0.77None
Thoracicoabdominal ganglion122 ± 84 of 426.80Up
Salivary gland0 ± 00 of 4 0.14Down
Crop21 ± 24 of 4 4.60Up
Midgut0 ± 00 of 4 0.10Down
Tubule2 ± 00 of 4 0.50Down
Hindgut3 ± 11 of 4 0.80None
Heart6 ± 12 of 4 1.38None
Fat body1 ± 10 of 4 0.31Down
Ovary3 ± 01 of 4 0.70None
Testis0 ± 00 of 4 0.20Down
Male accessory glands10 ± 22 of 4 2.40None
Virgin spermatheca0 ± 00 of 4 0.13Down
Mated spermatheca1 ± 00 of 4 0.36None
Adult carcass4 ± 20 of 4 0.90None
Larval CNS74 ± 94 of 416.30Up
Larval Salivary gland0 ± 00 of 4 0.11Down
Larval midgut2 ± 00 of 4 0.52None
Larval tubule4 ± 01 of 4 1.00None
Larval hindgut5 ± 13 of 4 1.22None
Larval fat body1 ± 00 of 4 0.30Down
Larval trachea0 ± 00 of 4 0.10Down
Larval carcass5 ± 21 of 4 1.30None
S2 cells (growing)0 ± 00 of 4 0.10Down
Whole fly4 ± 03 of 4

Looking for FBgn0004514. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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