FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0004573 through 18771 annotations produced 1 hits

Serotonin receptor (5-HT7):

Annotation Number : CG12073
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004573
Gbrowse : chr3R:26794863-26842569 (-) // 100.0 //
Probeset : 1632131_at
Accessions : protein= NP_524599;, nucleotide= NM_079860;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0004573.
BDGP gene expression has embryonic in situ data for 5-HT7: 4 pix of staining in 1 body parts.
Homophila reports that CG12073 is a close match (6e-11) to human gene CBBM;CBP;OPN1LW;RCP (NP_064445), a gene associated with Blue-cone monochromacy, 303700 (3);Colorblindness, protan (3).
TRiP has 2 RNAi stocks for FBgn0004573 available for purchase.
VDRC has 1 RNAi stocks for FBgn0004573 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	70 ± 2	4 of 4	23.40	Up
Head	13 ± 1	4 of 4	4.40	Up
Eye	5 ± 1	0 of 4	1.85	None
Thoracicoabdominal ganglion	74 ± 5	4 of 4	24.70	Up
Salivary gland	117 ± 15	4 of 4	39.16	Up
Crop	17 ± 1	4 of 4	5.90	Up
Midgut	5 ± 1	1 of 4	1.90	None
Tubule	3 ± 0	0 of 4	1.10	None
Hindgut	4 ± 1	1 of 4	1.40	None
Heart	5 ± 0	1 of 4	1.93	Up
Fat body	4 ± 2	0 of 4	1.61	None
Ovary	1 ± 1	0 of 4	0.50	None
Testis	1 ± 0	0 of 4	0.40	None
Male accessory glands	14 ± 2	3 of 4	4.70	Up
Virgin spermatheca	3 ± 0	0 of 4	1.20	None
Mated spermatheca	4 ± 1	0 of 4	1.41	None
Adult carcass	4 ± 1	0 of 4	1.50	None
Larval CNS	22 ± 3	4 of 4	7.63	Up
Larval Salivary gland	1 ± 0	0 of 4	0.48	None
Larval midgut	26 ± 2	4 of 4	8.80	Up
Larval tubule	85 ± 8	4 of 4	28.50	Up
Larval hindgut	4 ± 1	2 of 4	1.54	None
Larval fat body	1 ± 1	0 of 4	0.60	None
Larval trachea	1 ± 2	0 of 4	0.54	None
Larval carcass	1 ± 1	0 of 4	0.59	None
S2 cells (growing)	0 ± 0	0 of 4	0.16	Down
Whole fly	3 ± 0	0 of 4

Looking for FBgn0004573. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720