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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004575 through 18771 annotations produced 1 hits



synapsin (Syn):

Annotation Number : CG3985
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004575
Gbrowse : chr3R:6016409-6047805 (+) // 100.0 //
Probeset : 1636378_a_at
Accessions : protein= NP_731457; /// NP_731458; /// NP_731459; /// NP_731460; /// NP_788628;, nucleotide= NM_169332; /// NM_169333; /// NM_169334; /// NM_169335; /// NM_176451;
Pathway : 0008021 // synaptic vesicle // inferred from sequence or structural similarity /// 0008021 // synaptic vesicle // inferr
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from phy
FlyMine data for FBgn0004575.
Homophila reports that CG3985 is a close match (1e-91) to human gene SYN1 (NP_008881), a gene associated with Epilepsy, X-linked, with variable learning disabilities and behavior disorders, 300491 (3).
BioGrid reports that CG3985 interacts with CG4447 CG9646 CG8515 .
TRiP has 1 RNAi stocks for FBgn0004575 available for purchase.
VDRC has 4 RNAi stocks for FBgn0004575 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1352 564 of 418.50Up
Head459 374 of 4 6.30Up
Eye305 194 of 4 4.18Up
Thoracicoabdominal ganglion1552 414 of 421.20Up
Salivary gland9 20 of 4 0.13Down
Crop8 13 of 4 0.10Down
Midgut4 11 of 4 0.10Down
Tubule6 00 of 4 0.10Down
Hindgut3 11 of 4 0.00Down
Heart3 11 of 4 0.05Down
Fat body12 63 of 4 0.17Down
Ovary2 00 of 4 0.00Down
Testis0 00 of 4 0.00Down
Male accessory glands26 44 of 4 0.40Down
Virgin spermatheca20 24 of 4 0.28Down
Mated spermatheca17 24 of 4 0.24Down
Adult carcass23 34 of 4 0.30Down
Larval CNS818 654 of 411.18Up
Larval Salivary gland5 01 of 4 0.07Down
Larval midgut2 00 of 4 0.03Down
Larval tubule4 10 of 4 0.10Down
Larval hindgut2 11 of 4 0.03Down
Larval fat body2 10 of 4 0.00Down
Larval trachea9 53 of 4 0.13Down
Larval carcass7 02 of 4 0.10Down
S2 cells (growing)2 00 of 4 0.03Down
Whole fly73 44 of 4

Looking for FBgn0004575. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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