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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0004581 through 18771 annotations produced 1 hits

Putative nuclear binding protein (bgcn):

Annotation Number : CG30170
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004581
Gbrowse : chr2R:19740800-19746314 (-) // 100.0 //
Probeset : 1629714_at
Accessions : protein= NP_523832;, nucleotide= NM_079108;
Interpro : "0000900 // translation repressor activity
FlyMine data for FBgn0004581.
BDGP gene expression has embryonic in situ data for bgcn: 15 pix of staining in 2 body parts.
BioGrid reports that CG30170 interacts with CG10422 CG10422 CG10422 .
TRiP has 1 RNAi stocks for FBgn0004581 available for purchase.
VDRC has 3 RNAi stocks for FBgn0004581 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 00 of 4 0.10Down
Head5 10 of 4 0.20Down
Eye2 01 of 4 0.09Down
Thoracicoabdominal ganglion7 11 of 4 0.30Down
Salivary gland8 20 of 4 0.30Down
Crop10 12 of 4 0.40Down
Midgut6 10 of 4 0.20Down
Tubule7 00 of 4 0.30Down
Hindgut9 01 of 4 0.30Down
Heart4 00 of 4 0.16Down
Fat body11 11 of 4 0.41Down
Ovary4 02 of 4 0.20Down
Testis302 64 of 410.80Up
Male accessory glands18 14 of 4 0.70None
Virgin spermatheca9 00 of 4 0.32Down
Mated spermatheca10 13 of 4 0.36Down
Adult carcass13 40 of 4 0.50Down
Larval CNS10 14 of 4 0.37Down
Larval Salivary gland3 10 of 4 0.14Down
Larval midgut5 10 of 4 0.20Down
Larval tubule5 11 of 4 0.20Down
Larval hindgut10 03 of 4 0.37Down
Larval fat body59 243 of 4 2.10None
Larval trachea9 32 of 4 0.33Down
Larval carcass9 12 of 4 0.33Down
S2 cells (growing)7 12 of 4 0.28Down
Whole fly28 34 of 4

Looking for FBgn0004581. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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