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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004584 through 18771 annotations produced 1 hits



strand transferase (Rrp1):

Annotation Number : CG3178
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004584
Gbrowse : chr2L:2969772-2972676 (-) // 100.0 //
Probeset : 1625109_at
Accessions : protein= NP_001137776; /// NP_476841;, nucleotide= NM_001144304; /// NM_057493;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003906 // DNA-(apurinic or apyrimidinic site) lyase a
FlyMine data for FBgn0004584.
BDGP gene expression has embryonic in situ data for Rrp1: 40 pix of staining in 22 body parts.
TRiP has 1 RNAi stocks for FBgn0004584 available for purchase.
VDRC has 2 RNAi stocks for FBgn0004584 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain107 44 of 4 0.50Down
Head42 14 of 4 0.20Down
Eye20 04 of 4 0.09Down
Thoracicoabdominal ganglion98 44 of 4 0.50Down
Salivary gland45 14 of 4 0.21Down
Crop142 84 of 4 0.70Down
Midgut63 24 of 4 0.30Down
Tubule30 44 of 4 0.10Down
Hindgut107 84 of 4 0.50Down
Heart50 24 of 4 0.23Down
Fat body58 74 of 4 0.27Down
Ovary505 64 of 4 2.30Up
Testis116 34 of 4 0.50Down
Male accessory glands105 64 of 4 0.50Down
Virgin spermatheca42 54 of 4 0.19Down
Mated spermatheca43 34 of 4 0.20Down
Adult carcass44 44 of 4 0.20Down
Larval CNS1076 454 of 4 4.95Up
Larval Salivary gland313 174 of 4 1.44Up
Larval midgut69 64 of 4 0.32Down
Larval tubule74 44 of 4 0.30Down
Larval hindgut121 64 of 4 0.56Down
Larval fat body169 54 of 4 0.80Down
Larval trachea232 184 of 4 1.07None
Larval carcass147 164 of 4 0.68Down
S2 cells (growing)584 164 of 4 2.68Up
Whole fly217 84 of 4

Looking for FBgn0004584. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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