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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004587 through 18771 annotations produced 5 hits



Serine/arginine rich protein 55 (B52):

Annotation Number : CG10851
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004587
Gbrowse : chr3R:9487021-9488913 (+) // 100.0 //
Probeset : 1631082_at
Accessions : protein= NP_001163603; /// NP_001163604; /// NP_001163605; /// NP_788665; /// NP_788666; /// NP_788668; /// NP_788669; /// NP_788670;, nucleotide= NM_001170132; /// NM_001170133; /// NM_001170134; /// NM_176488; /// NM_176489; /// NM_176491; /// NM_176492; /// NM_176493;
Pathway : via spliceosome // inferred from mutant phenotype /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
FlyMine data for FBgn0004587.
BDGP gene expression has embryonic in situ data for B52: 8 pix of staining in 2 body parts.
BioGrid reports that CG10851 interacts with CG11380 CG14667 CG15067 CG31029 CG32772 CG10128 CG2759 CG2759 CG5655 CG2848 .
TRiP has 1 RNAi stocks for FBgn0004587 available for purchase.
VDRC has 3 RNAi stocks for FBgn0004587 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain25 54 of 4 4.10None
Head5 21 of 4 0.80None
Eye5 00 of 4 0.85None
Thoracicoabdominal ganglion10 32 of 4 1.60None
Salivary gland10 20 of 4 1.61None
Crop8 11 of 4 1.30None
Midgut8 13 of 4 1.30None
Tubule3 00 of 4 0.60Down
Hindgut8 14 of 4 1.30None
Heart7 12 of 4 1.17None
Fat body8 23 of 4 1.43None
Ovary5 03 of 4 0.90None
Testis2 00 of 4 0.50None
Male accessory glands14 24 of 4 2.30None
Virgin spermatheca1 00 of 4 0.19Down
Mated spermatheca1 00 of 4 0.17Down
Adult carcass5 20 of 4 0.90None
Larval CNS9 24 of 4 1.46None
Larval Salivary gland6 11 of 4 1.04None
Larval midgut2 00 of 4 0.45None
Larval tubule5 12 of 4 0.80None
Larval hindgut2 00 of 4 0.38Down
Larval fat body23 34 of 4 3.70Up
Larval trachea8 11 of 4 1.29None
Larval carcass3 10 of 4 0.54None
S2 cells (growing)20 14 of 4 3.24Up
Whole fly6 12 of 4



Serine/arginine rich protein 55 (B52):

Annotation Number : CG10851
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004587
Gbrowse : chr3R:9487021-9492617 (+) // 100.0 //
Probeset : 1628399_s_at
Accessions : protein= NP_001163603; /// NP_001163604; /// NP_001163605; /// NP_788665; /// NP_788666; /// NP_788668; /// NP_788669; /// NP_788670;, nucleotide= NM_001170132; /// NM_001170133; /// NM_001170134; /// NM_176488; /// NM_176489; /// NM_176491; /// NM_176492; /// NM_176493;
Pathway : via spliceosome // inferred from mutant phenotype /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
FlyMine data for FBgn0004587.
BDGP gene expression has embryonic in situ data for B52: 8 pix of staining in 2 body parts.
BioGrid reports that CG10851 interacts with CG11380 CG14667 CG15067 CG31029 CG32772 CG10128 CG2759 CG2759 CG5655 CG2848 .
TRiP has 1 RNAi stocks for FBgn0004587 available for purchase.
VDRC has 3 RNAi stocks for FBgn0004587 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1440 534 of 4 1.40Up
Head662 224 of 4 0.60Down
Eye774 384 of 4 0.74Down
Thoracicoabdominal ganglion1108 584 of 4 1.10None
Salivary gland831 184 of 4 0.79Down
Crop1054 174 of 4 1.00None
Midgut683 114 of 4 0.70Down
Tubule676 204 of 4 0.60Down
Hindgut760 124 of 4 0.70Down
Heart513 94 of 4 0.49Down
Fat body865 654 of 4 0.83Down
Ovary1739 154 of 4 1.70Up
Testis301 94 of 4 0.30Down
Male accessory glands1180 694 of 4 1.10None
Virgin spermatheca921 244 of 4 0.88Down
Mated spermatheca1017 324 of 4 0.97None
Adult carcass572 214 of 4 0.50Down
Larval CNS2423 1144 of 4 2.32Up
Larval Salivary gland1359 594 of 4 1.30Up
Larval midgut767 114 of 4 0.73Down
Larval tubule993 184 of 4 0.90None
Larval hindgut1275 654 of 4 1.22Up
Larval fat body920 514 of 4 0.90None
Larval trachea1302 1334 of 4 1.25Up
Larval carcass1271 814 of 4 1.22None
S2 cells (growing)1753 334 of 4 1.68Up
Whole fly1046 394 of 4



Serine/arginine rich protein 55 (B52):

Annotation Number : CG10851
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004587
Gbrowse : chr3R:9487021-9492617 (+) // 100.0 //
Probeset : 1633821_at
Accessions : protein= NP_001163603; /// NP_001163604; /// NP_001163605; /// NP_788665; /// NP_788666; /// NP_788668; /// NP_788669; /// NP_788670;, nucleotide= NM_001170132; /// NM_001170133; /// NM_001170134; /// NM_176488; /// NM_176489; /// NM_176491; /// NM_176492; /// NM_176493;
Pathway : via spliceosome // inferred from mutant phenotype /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
FlyMine data for FBgn0004587.
BDGP gene expression has embryonic in situ data for B52: 8 pix of staining in 2 body parts.
BioGrid reports that CG10851 interacts with CG11380 CG14667 CG15067 CG31029 CG32772 CG10128 CG2759 CG2759 CG5655 CG2848 .
TRiP has 1 RNAi stocks for FBgn0004587 available for purchase.
VDRC has 3 RNAi stocks for FBgn0004587 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain310 154 of 414.60Up
Head132 154 of 4 6.20Up
Eye337 264 of 415.89Up
Thoracicoabdominal ganglion238 154 of 411.20Up
Salivary gland25 33 of 4 1.21None
Crop21 24 of 4 1.00None
Midgut14 33 of 4 0.70None
Tubule13 03 of 4 0.60Down
Hindgut24 14 of 4 1.20None
Heart13 24 of 4 0.64None
Fat body24 54 of 4 1.15None
Ovary14 04 of 4 0.70None
Testis7 04 of 4 0.40Down
Male accessory glands29 44 of 4 1.40None
Virgin spermatheca7 03 of 4 0.35Down
Mated spermatheca11 14 of 4 0.55Down
Adult carcass20 34 of 4 1.00None
Larval CNS184 204 of 4 8.71Up
Larval Salivary gland33 24 of 4 1.57Up
Larval midgut8 02 of 4 0.41Down
Larval tubule22 24 of 4 1.10None
Larval hindgut18 24 of 4 0.88None
Larval fat body32 24 of 4 1.50Up
Larval trachea30 64 of 4 1.45None
Larval carcass15 14 of 4 0.73None
S2 cells (growing)39 14 of 4 1.84Up
Whole fly21 24 of 4



Serine/arginine rich protein 55 (B52):

Annotation Number : CG10851
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004587
Gbrowse : chr3R:9487021-9489304 (+) // 100.0 //
Probeset : 1632447_at
Accessions : protein= NP_001163603; /// NP_001163604; /// NP_001163605; /// NP_788665; /// NP_788666; /// NP_788668; /// NP_788669; /// NP_788670;, nucleotide= NM_001170132; /// NM_001170133; /// NM_001170134; /// NM_176488; /// NM_176489; /// NM_176491; /// NM_176492; /// NM_176493;
Pathway : via spliceosome // inferred from mutant phenotype /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
FlyMine data for FBgn0004587.
BDGP gene expression has embryonic in situ data for B52: 8 pix of staining in 2 body parts.
BioGrid reports that CG10851 interacts with CG11380 CG14667 CG15067 CG31029 CG32772 CG10128 CG2759 CG2759 CG5655 CG2848 .
TRiP has 1 RNAi stocks for FBgn0004587 available for purchase.
VDRC has 3 RNAi stocks for FBgn0004587 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain141 114 of 4 8.50Up
Head19 34 of 4 1.20None
Eye16 14 of 4 1.00None
Thoracicoabdominal ganglion38 114 of 4 2.30None
Salivary gland25 40 of 4 1.52None
Crop25 24 of 4 1.50None
Midgut21 21 of 4 1.30None
Tubule10 12 of 4 0.60Down
Hindgut25 24 of 4 1.50None
Heart10 11 of 4 0.62None
Fat body11 44 of 4 0.70None
Ovary16 14 of 4 1.00None
Testis6 03 of 4 0.40None
Male accessory glands35 14 of 4 2.10Up
Virgin spermatheca6 11 of 4 0.40None
Mated spermatheca8 21 of 4 0.50None
Adult carcass31 53 of 4 1.90None
Larval CNS29 74 of 4 1.75Up
Larval Salivary gland19 63 of 4 1.14None
Larval midgut9 12 of 4 0.56None
Larval tubule18 24 of 4 1.10None
Larval hindgut14 14 of 4 0.88None
Larval fat body45 94 of 4 2.70Up
Larval trachea17 14 of 4 1.04None
Larval carcass11 12 of 4 0.67None
S2 cells (growing)28 24 of 4 1.74Up
Whole fly16 34 of 4



Serine/arginine rich protein 55 (B52):

Annotation Number : CG10851
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004587
Gbrowse : chr3R:9487021-9489304 (+) // 100.0 //
Probeset : 1624547_s_at
Accessions : protein= NP_001163603; /// NP_001163604; /// NP_001163605; /// NP_788665; /// NP_788666; /// NP_788668; /// NP_788669; /// NP_788670;, nucleotide= NM_001170132; /// NM_001170133; /// NM_001170134; /// NM_176488; /// NM_176489; /// NM_176491; /// NM_176492; /// NM_176493;
Pathway : via spliceosome // inferred from mutant phenotype /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
FlyMine data for FBgn0004587.
BDGP gene expression has embryonic in situ data for B52: 8 pix of staining in 2 body parts.
BioGrid reports that CG10851 interacts with CG11380 CG14667 CG15067 CG31029 CG32772 CG10128 CG2759 CG2759 CG5655 CG2848 .
TRiP has 1 RNAi stocks for FBgn0004587 available for purchase.
VDRC has 3 RNAi stocks for FBgn0004587 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain313 124 of 4 0.70Down
Head195 154 of 4 0.40Down
Eye142 124 of 4 0.32Down
Thoracicoabdominal ganglion143 94 of 4 0.30Down
Salivary gland192 184 of 4 0.43Down
Crop316 174 of 4 0.70Down
Midgut257 104 of 4 0.60Down
Tubule67 34 of 4 0.20Down
Hindgut257 104 of 4 0.60Down
Heart162 104 of 4 0.36Down
Fat body206 554 of 4 0.46Down
Ovary939 204 of 4 2.10Up
Testis97 104 of 4 0.20Down
Male accessory glands253 124 of 4 0.60Down
Virgin spermatheca31 24 of 4 0.07Down
Mated spermatheca50 54 of 4 0.11Down
Adult carcass206 134 of 4 0.50Down
Larval CNS925 514 of 4 2.05Up
Larval Salivary gland538 474 of 4 1.19None
Larval midgut169 74 of 4 0.38Down
Larval tubule407 284 of 4 0.90None
Larval hindgut288 164 of 4 0.64Down
Larval fat body353 314 of 4 0.80Down
Larval trachea453 804 of 4 1.00None
Larval carcass366 174 of 4 0.81Down
S2 cells (growing)1092 114 of 4 2.42Up
Whole fly451 184 of 4

Looking for FBgn0004587. 5 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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