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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004589 through 18771 annotations produced 1 hits



Gene II (Eig71Eb):

Annotation Number : CG7355
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004589
Gbrowse : chr3L:15643060-15643641 (+) // 100.0 //
Probeset : 1623224_at
Accessions : protein= NP_524089;, nucleotide= NM_079365;
FlyMine data for FBgn0004589.
VDRC has 1 RNAi stocks for FBgn0004589 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.20Down
Head2 ± 10 of 4 0.50None
Eye0 ± 00 of 4 0.14Down
Thoracicoabdominal ganglion1 ± 10 of 4 0.30None
Salivary gland3 ± 10 of 4 0.73None
Crop1 ± 00 of 4 0.30None
Midgut3 ± 20 of 4 0.60None
Tubule1 ± 00 of 4 0.40Down
Hindgut2 ± 10 of 4 0.50None
Heart1 ± 00 of 4 0.20None
Fat body6 ± 21 of 4 1.19None
Ovary1 ± 10 of 4 0.40None
Testis32 ± 24 of 4 6.40Up
Male accessory glands6 ± 30 of 4 1.40None
Virgin spermatheca0 ± 00 of 4 0.14None
Mated spermatheca0 ± 00 of 4 0.18None
Adult carcass3 ± 00 of 4 0.60None
Larval CNS1 ± 10 of 4 0.27None
Larval Salivary gland88 ± 104 of 417.41Up
Larval midgut4 ± 00 of 4 0.92None
Larval tubule2 ± 00 of 4 0.40None
Larval hindgut2 ± 00 of 4 0.38None
Larval fat body124 ± 1161 of 424.40None
Larval trachea0 ± 00 of 4 0.09Down
Larval carcass1 ± 00 of 4 0.27None
S2 cells (growing)3 ± 10 of 4 0.63None
Whole fly5 ± 10 of 4

Looking for FBgn0004589. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime