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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0004590 through 18771 annotations produced 1 hits

Gene III (Eig71Ec):

Annotation Number : CG7608
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004590
Gbrowse : chr3L:15644571-15645351 (-) // 100.0 //
Probeset : 1628967_at
Accessions : protein= NP_524090;, nucleotide= NM_079366;
FlyMine data for FBgn0004590.
VDRC has 2 RNAi stocks for FBgn0004590 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 01 of 4 1.10None
Head3 00 of 4 0.90None
Eye4 21 of 4 1.03None
Thoracicoabdominal ganglion2 10 of 4 0.60None
Salivary gland15 51 of 4 3.63None
Crop3 00 of 4 0.90None
Midgut4 11 of 4 1.10None
Tubule5 01 of 4 1.40Up
Hindgut5 01 of 4 1.40None
Heart4 00 of 4 1.02None
Fat body7 43 of 4 1.84None
Ovary3 01 of 4 0.80None
Testis5 11 of 4 1.30None
Male accessory glands6 20 of 4 1.60None
Virgin spermatheca9 04 of 4 2.18Up
Mated spermatheca10 22 of 4 2.55None
Adult carcass6 11 of 4 1.70None
Larval CNS4 22 of 4 1.03None
Larval Salivary gland22 24 of 4 5.41Up
Larval midgut7 14 of 4 1.78None
Larval tubule3 10 of 4 0.90None
Larval hindgut4 01 of 4 1.10None
Larval fat body67 592 of 416.30None
Larval trachea4 20 of 4 1.03None
Larval carcass2 00 of 4 0.61None
S2 cells (growing)2 10 of 4 0.48None
Whole fly4 01 of 4

Looking for FBgn0004590. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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