FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0004590 through 18771 annotations produced 1 hits

Gene III (Eig71Ec):

Annotation Number : CG7608
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004590
Gbrowse : chr3L:15644571-15645351 (-) // 100.0 //
Probeset : 1628967_at
Accessions : protein= NP_524090;, nucleotide= NM_079366;
FlyMine data for FBgn0004590.
VDRC has 2 RNAi stocks for FBgn0004590 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 0	1 of 4	1.10	None
Head	3 ± 0	0 of 4	0.90	None
Eye	4 ± 2	1 of 4	1.03	None
Thoracicoabdominal ganglion	2 ± 1	0 of 4	0.60	None
Salivary gland	15 ± 5	1 of 4	3.63	None
Crop	3 ± 0	0 of 4	0.90	None
Midgut	4 ± 1	1 of 4	1.10	None
Tubule	5 ± 0	1 of 4	1.40	Up
Hindgut	5 ± 0	1 of 4	1.40	None
Heart	4 ± 0	0 of 4	1.02	None
Fat body	7 ± 4	3 of 4	1.84	None
Ovary	3 ± 0	1 of 4	0.80	None
Testis	5 ± 1	1 of 4	1.30	None
Male accessory glands	6 ± 2	0 of 4	1.60	None
Virgin spermatheca	9 ± 0	4 of 4	2.18	Up
Mated spermatheca	10 ± 2	2 of 4	2.55	None
Adult carcass	6 ± 1	1 of 4	1.70	None
Larval CNS	4 ± 2	2 of 4	1.03	None
Larval Salivary gland	22 ± 2	4 of 4	5.41	Up
Larval midgut	7 ± 1	4 of 4	1.78	None
Larval tubule	3 ± 1	0 of 4	0.90	None
Larval hindgut	4 ± 0	1 of 4	1.10	None
Larval fat body	67 ± 59	2 of 4	16.30	None
Larval trachea	4 ± 2	0 of 4	1.03	None
Larval carcass	2 ± 0	0 of 4	0.61	None
S2 cells (growing)	2 ± 1	0 of 4	0.48	None
Whole fly	4 ± 0	1 of 4

Looking for FBgn0004590. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720