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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0004591 through 18771 annotations produced 1 hits

Gene IV (Eig71Ed):

Annotation Number : CG7350
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004591
Gbrowse : chr3L:15645643-15646204 (+) // 100.0 //
Probeset : 1625381_at
Accessions : protein= NP_524091;, nucleotide= NM_079367;
FlyMine data for FBgn0004591.
BDGP gene expression has embryonic in situ data for Eig71Ed: 4 pix of staining in 1 body parts.
VDRC has 4 RNAi stocks for FBgn0004591 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 1.10None
Head1 00 of 4 1.00None
Eye2 10 of 4 1.40None
Thoracicoabdominal ganglion1 00 of 4 0.80None
Salivary gland13 10 of 4 7.74Up
Crop2 00 of 4 1.30None
Midgut1 00 of 4 0.60None
Tubule2 00 of 4 1.60None
Hindgut1 00 of 4 0.60None
Heart5 10 of 4 2.90None
Fat body4 30 of 4 2.54None
Ovary2 00 of 4 1.40None
Testis4 10 of 4 2.60None
Male accessory glands2 00 of 4 1.20None
Virgin spermatheca1 00 of 4 0.69None
Mated spermatheca0 00 of 4 0.29None
Adult carcass1 00 of 4 0.90None
Larval CNS1 00 of 4 0.79None
Larval Salivary gland43 123 of 424.93Up
Larval midgut4 10 of 4 2.54None
Larval tubule1 00 of 4 0.90None
Larval hindgut3 10 of 4 2.11None
Larval fat body58 571 of 433.50None
Larval trachea5 20 of 4 3.27Up
Larval carcass10 03 of 4 5.71Up
S2 cells (growing)2 00 of 4 1.29None
Whole fly1 00 of 4

Looking for FBgn0004591. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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