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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004592 through 18771 annotations produced 1 hits



Gene VII (Eig71Ee):

Annotation Number : CG7604
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004592
Gbrowse : chr3L:15647695-15649106 (-) // 100.0 //
Probeset : 1625987_at
Accessions : protein= NP_524092;, nucleotide= NM_079368;
Pathway : 0005576 // extracellular region // inferred by curator
Interpro : 0005198 // structural molecule activity // traceable author statement /// 0005515 // protein binding // inferred from ph
FlyMine data for FBgn0004592.
BDGP gene expression has embryonic in situ data for Eig71Ee: 8 pix of staining in 1 body parts.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 00 of 4 0.70None
Head10 ± 21 of 4 1.00None
Eye7 ± 02 of 4 0.63None
Thoracicoabdominal ganglion13 ± 20 of 4 1.20None
Salivary gland14 ± 60 of 4 1.27None
Crop11 ± 10 of 4 1.00None
Midgut16 ± 00 of 4 1.40Up
Tubule11 ± 00 of 4 1.00None
Hindgut16 ± 21 of 4 1.40None
Heart7 ± 10 of 4 0.63None
Fat body18 ± 23 of 4 1.62Up
Ovary8 ± 14 of 4 0.70None
Testis8 ± 13 of 4 0.70None
Male accessory glands25 ± 14 of 4 2.20Up
Virgin spermatheca12 ± 10 of 4 1.11None
Mated spermatheca11 ± 31 of 4 1.03None
Adult carcass32 ± 41 of 4 2.80Up
Larval CNS13 ± 13 of 4 1.17None
Larval Salivary gland9832 ± 6244 of 4866.34Up
Larval midgut14 ± 10 of 4 1.30None
Larval tubule15 ± 11 of 4 1.40None
Larval hindgut12 ± 11 of 4 1.06None
Larval fat body404 ± 1464 of 435.60None
Larval trachea7 ± 30 of 4 0.67None
Larval carcass14 ± 10 of 4 1.31None
S2 cells (growing)12 ± 11 of 4 1.12None
Whole fly11 ± 13 of 4

Looking for FBgn0004592. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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