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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004594 through 18771 annotations produced 1 hits



Gene VI (Eig71Eg):

Annotation Number : CG7336
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004594
Gbrowse : chr3L:15650727-15651258 (+) // 100.0 //
Probeset : 1637964_at
Accessions : protein= NP_524094;, nucleotide= NM_079370;
FlyMine data for FBgn0004594.
VDRC has 2 RNAi stocks for FBgn0004594 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 2.80None
Head1 10 of 4 2.20None
Eye1 00 of 4 1.63None
Thoracicoabdominal ganglion2 00 of 4 3.60None
Salivary gland2 00 of 4 3.40Up
Crop2 10 of 4 3.30None
Midgut0 00 of 4 0.80None
Tubule2 00 of 4 3.70Up
Hindgut1 00 of 4 2.30None
Heart0 00 of 4 0.50None
Fat body4 30 of 4 6.13None
Ovary0 00 of 4 0.60None
Testis4 00 of 4 5.30Up
Male accessory glands3 20 of 4 4.00None
Virgin spermatheca1 00 of 4 1.43None
Mated spermatheca1 00 of 4 2.43None
Adult carcass0 00 of 4 1.20None
Larval CNS1 00 of 4 1.57None
Larval Salivary gland80 353 of 4106.90None
Larval midgut0 00 of 4 0.77None
Larval tubule1 10 of 4 1.80None
Larval hindgut1 00 of 4 1.50None
Larval fat body25 241 of 434.50None
Larval trachea0 00 of 4 0.57None
Larval carcass0 00 of 4 0.67None
S2 cells (growing)1 00 of 4 2.10None
Whole fly0 00 of 4

Looking for FBgn0004594. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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