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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004595 through 18771 annotations produced 1 hits



chr3R:7198509-7219326 (+) // 100.0 // (Prospero):

Annotation Number : CG17228
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1635500_a_at
Accessions : protein= , nucleotide= NP_524317; /// NP_731565; /// NP_788636;
Pathway : "0001708 // cell fate specification // traceable author statement /// 0001754 // eye photoreceptor cell differentiation
Interpro : DNA-dependent // non-traceable author statement /// 0006355 // regulation of transcription
FlyMine data for full length.
BioGrid reports that CG17228 interacts with CG6757 CG7417 CG9986 CG4032 CG3166 CG17077 CG9949 CG12249 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain804 444 of 430.30Up
Head123 94 of 4 4.60Up
Eye103 44 of 4 3.91Up
Thoracicoabdominal ganglion711 564 of 426.80Up
Salivary gland21 52 of 4 0.81None
Crop14 23 of 4 0.50Down
Midgut38 24 of 4 1.40Up
Tubule10 10 of 4 0.40Down
Hindgut13 13 of 4 0.50Down
Heart402 724 of 415.17Up
Fat body27 64 of 4 1.02None
Ovary0 00 of 4 0.00Down
Testis26 24 of 4 1.00None
Male accessory glands7 10 of 4 0.30Down
Virgin spermatheca14 13 of 4 0.55Down
Mated spermatheca14 34 of 4 0.55Down
Adult carcass36 24 of 4 1.40None
Larval CNS1227 824 of 446.28Up
Larval Salivary gland10 13 of 4 0.41Down
Larval midgut28 34 of 4 1.06None
Larval tubule21 34 of 4 0.80None
Larval hindgut10 14 of 4 0.38Down
Larval fat body7 10 of 4 0.30Down
Larval trachea13 93 of 4 0.51None
Larval carcass17 24 of 4 0.68None
S2 cells (growing)4 02 of 4 0.15Down
Whole fly26 34 of 4

Looking for FBgn0004595. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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