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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004606 through 18771 annotations produced 1 hits



Zn finger homeodomain 1 (zfh1):

Annotation Number : CG1322
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004606
Gbrowse : chr3R:26591647-26614205 (+) // 100.0 //
Probeset : 1628262_a_at
Accessions : protein= NP_476850; /// NP_733402;, nucleotide= NM_057502; /// NM_170523;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007280 // pole cell migration // traceable author statement /
Interpro : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
FlyMine data for FBgn0004606.
BDGP gene expression has embryonic in situ data for zfh1: 28 pix of staining in 21 body parts.
Homophila reports that CG1322 is a close match (1e-11) to human gene WT1 (NP_077742), a gene associated with Denys-Drash syndrome, 194080 (3);Frasier syndrome, 136680 (3);Mesangial sclerosis, isolated diffuse, 256370 (3);WAGR syndrome, 194072 (3);Wilms tumor, type 1, 194070 (3).
BioGrid reports that CG1322 interacts with CG31682 CG13245 CG14005 CG2865 CG3114 CG3891 CG6429 CG6933 CG7570 CG2328 CG7895 Dmel CG34110 .
TRiP has 2 RNAi stocks for FBgn0004606 available for purchase.
VDRC has 3 RNAi stocks for FBgn0004606 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain93 24 of 4 3.30Up
Head39 44 of 4 1.40None
Eye39 34 of 4 1.41None
Thoracicoabdominal ganglion125 74 of 4 4.40Up
Salivary gland17 31 of 4 0.61None
Crop104 64 of 4 3.70Up
Midgut1 00 of 4 0.10Down
Tubule5 00 of 4 0.20Down
Hindgut14 04 of 4 0.50None
Heart515 364 of 418.22Up
Fat body56 54 of 4 1.98Up
Ovary41 24 of 4 1.50None
Testis8 13 of 4 0.30Down
Male accessory glands5 10 of 4 0.20Down
Virgin spermatheca24 24 of 4 0.87None
Mated spermatheca37 54 of 4 1.32None
Adult carcass36 74 of 4 1.30None
Larval CNS155 194 of 4 5.51Up
Larval Salivary gland3 11 of 4 0.10Down
Larval midgut3 10 of 4 0.11Down
Larval tubule15 54 of 4 0.60None
Larval hindgut12 14 of 4 0.44None
Larval fat body183 274 of 4 6.50Up
Larval trachea26 94 of 4 0.94None
Larval carcass69 64 of 4 2.46Up
S2 cells (growing)748 114 of 426.46Up
Whole fly28 64 of 4

Looking for FBgn0004606. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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