Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004620 through 18771 annotations produced 1 hits



glutamate receptor (GluRIIA):

Annotation Number : CG6992
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004620
Gbrowse : chr2L:5555073-5558994 (+) // 100.0 //
Probeset : 1630710_at
Accessions : protein= NP_523484;, nucleotide= NM_078760;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from sequence or str
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activit
FlyMine data for FBgn0004620.
BDGP gene expression has embryonic in situ data for Glu-RIIA: 10 pix of staining in 3 body parts.
Homophila reports that CG6992 is a close match (2e-101) to human gene GLUR3;GRIA3;MRX94 (NP_000819), a gene associated with Mental retardation, X-linked 94, 300699 (3).
BioGrid reports that CG6992 interacts with CG32592 .
TRiP has 1 RNAi stocks for FBgn0004620 available for purchase.
VDRC has 1 RNAi stocks for FBgn0004620 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain37 04 of 4 2.30Up
Head19 14 of 4 1.20None
Eye13 23 of 4 0.78None
Thoracicoabdominal ganglion27 34 of 4 1.60None
Salivary gland9 40 of 4 0.57None
Crop42 24 of 4 2.50Up
Midgut20 24 of 4 1.20None
Tubule38 23 of 4 2.30Up
Hindgut67 24 of 4 4.00Up
Heart135 134 of 4 8.08Up
Fat body14 22 of 4 0.87None
Ovary3 00 of 4 0.20Down
Testis11 14 of 4 0.70None
Male accessory glands28 24 of 4 1.70Up
Virgin spermatheca16 04 of 4 1.00None
Mated spermatheca25 24 of 4 1.53None
Adult carcass31 54 of 4 1.90None
Larval CNS4 11 of 4 0.24Down
Larval Salivary gland4 10 of 4 0.25Down
Larval midgut21 14 of 4 1.29None
Larval tubule56 44 of 4 3.40Up
Larval hindgut45 44 of 4 2.69Up
Larval fat body5 20 of 4 0.40Down
Larval trachea8 70 of 4 0.49None
Larval carcass132 104 of 4 7.89Up
S2 cells (growing)4 10 of 4 0.27Down
Whole fly16 33 of 4

Looking for FBgn0004620. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime