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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0004623 through 18771 annotations produced 1 hits

guanine nucleotide regulatory protein beta subunit (Gbeta76C):

Annotation Number : CG8770
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004623
Gbrowse : chr3L:19680727-19683092 (+) // 100.0 //
Probeset : 1624519_at
Accessions : protein= NP_523720;, nucleotide= NM_078996;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005834 // heterotrimeric G-protein complex // inferred from dire
Interpro : 0003924 // GTPase activity // inferred from mutant phenotype /// 0003924 // GTPase activity // non-traceable author stat
FlyMine data for FBgn0004623.
BDGP gene expression has embryonic in situ data for Gbeta76C: 18 pix of staining in 2 body parts.
Homophila reports that CG8770 is a close match (1e-13) to human gene LIS1;PAFAH1B1 (NP_000421), a gene associated with Lissencephaly-1, 607432 (3);Subcortical laminar heterotopia (3).
BioGrid reports that CG8770 interacts with CG3694 .
TRiP has 1 RNAi stocks for FBgn0004623 available for purchase.
VDRC has 3 RNAi stocks for FBgn0004623 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain151 114 of 4 0.50Down
Head3759 1164 of 411.30Up
Eye8830 1014 of 426.48Up
Thoracicoabdominal ganglion8 11 of 4 0.00Down
Salivary gland6 10 of 4 0.02Down
Crop10 10 of 4 0.00Down
Midgut15 20 of 4 0.00Down
Tubule9 01 of 4 0.00Down
Hindgut12 10 of 4 0.00Down
Heart15 64 of 4 0.05Down
Fat body11 40 of 4 0.03Down
Ovary7 11 of 4 0.00Down
Testis8 03 of 4 0.00Down
Male accessory glands6 10 of 4 0.00Down
Virgin spermatheca9 10 of 4 0.03Down
Mated spermatheca12 21 of 4 0.04Down
Adult carcass9 30 of 4 0.00Down
Larval CNS4 00 of 4 0.01Down
Larval Salivary gland5 11 of 4 0.02Down
Larval midgut10 30 of 4 0.03Down
Larval tubule11 10 of 4 0.00Down
Larval hindgut9 21 of 4 0.03Down
Larval fat body10 20 of 4 0.00Down
Larval trachea336 6513 of 4 1.01None
Larval carcass12 30 of 4 0.04Down
S2 cells (growing)11 10 of 4 0.03Down
Whole fly333 264 of 4

Looking for FBgn0004623. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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