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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004635 through 18771 annotations produced 1 hits



rhomboid-1 (rho):

Annotation Number : CG1004
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004635
Gbrowse : chr3L:1463791-1468483 (+) // 100.0 //
Probeset : 1635462_at
Accessions : protein= NP_523883;, nucleotide= NM_079159;
Pathway : open tracheal system // inferred from mutant phenotype /// 0035202 // tracheal pit formation in open tracheal system //
Interpro : open tracheal system // traceable author statement /// 0048149 // behavioral response to ethanol // inferred from mutan
FlyMine data for FBgn0004635.
BioGrid reports that CG1004 interacts with CG3166 CG11579 CG9885 CG12676 CG1007 CG1007 CG17610 CG5460 CG11450 CG4444 CG9375 CG1214 CG1214 CG1214 CG4385 CG4385 CG4385 CG4385 CG4385 CG4385 CG4385 CG4385 CG4385 CG4385 CG4385 CG4385 CG4385 CG4385 CG3722 CG9224 CG9224 CG14026 CG14026 CG10079 CG10079 CG10079 CG10079 CG10079 CG10079 CG10079 CG10079 CG10079 CG10079 CG10079 CG10079 CG10491 CG10491 CG10491 CG10491 CG10491 CG10491 CG10491 CG10491 CG10491 CG10491 CG10491 CG3411 CG3411 CG3411 CG3411 CG4531 CG7873 CG3936 CG13345 CG7508 CG9885 CG1007 CG1007 CG7935 CG10334 CG10334 CG10334 CG10334 CG1921 CG10491 CG33166 .
TRiP has 3 RNAi stocks for FBgn0004635 available for purchase.
VDRC has 3 RNAi stocks for FBgn0004635 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain262 244 of 410.50Up
Head133 114 of 4 5.30Up
Eye109 84 of 4 4.36Up
Thoracicoabdominal ganglion355 194 of 414.20Up
Salivary gland15 40 of 4 0.61None
Crop23 04 of 4 0.90None
Midgut17 14 of 4 0.70None
Tubule9 13 of 4 0.40Down
Hindgut18 24 of 4 0.70None
Heart13 13 of 4 0.53None
Fat body26 74 of 4 1.03None
Ovary4 12 of 4 0.20Down
Testis5 02 of 4 0.20Down
Male accessory glands12 02 of 4 0.50None
Virgin spermatheca38 34 of 4 1.53None
Mated spermatheca61 34 of 4 2.44Up
Adult carcass33 34 of 4 1.30None
Larval CNS110 164 of 4 4.40Up
Larval Salivary gland9 32 of 4 0.36Down
Larval midgut13 14 of 4 0.54None
Larval tubule10 14 of 4 0.40Down
Larval hindgut65 64 of 4 2.61Up
Larval fat body5 11 of 4 0.20Down
Larval trachea46 114 of 4 1.86Up
Larval carcass190 224 of 4 7.61Up
S2 cells (growing)60 94 of 4 2.39Up
Whole fly25 44 of 4

Looking for FBgn0004635. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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