Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004643 through 18771 annotations produced 1 hits



Zeste-White 10 (mit(1)15):

Annotation Number : CG9900
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004643
Gbrowse : chrX:2497886-2500861 (+) // 100.0 //
Probeset : 1634604_at
Accessions : protein= NP_001033828; /// NP_524901;, nucleotide= NM_001038739; /// NM_080162;
Pathway : "0000775 // chromosome
Interpro : centromeric region // inferred from electronic annotation /// 0000776 // kinetochore // inferred from direct assay ///
FlyMine data for FBgn0004643.
BDGP gene expression has embryonic in situ data for mit(1)15: 18 pix of staining in 10 body parts.
VDRC has 3 RNAi stocks for FBgn0004643 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain74 ± 14 of 4 0.50Down
Head47 ± 44 of 4 0.30Down
Eye55 ± 44 of 4 0.34Down
Thoracicoabdominal ganglion69 ± 34 of 4 0.40Down
Salivary gland135 ± 54 of 4 0.82None
Crop46 ± 44 of 4 0.30Down
Midgut47 ± 24 of 4 0.30Down
Tubule61 ± 14 of 4 0.40Down
Hindgut42 ± 24 of 4 0.30Down
Heart54 ± 24 of 4 0.33Down
Fat body49 ± 74 of 4 0.30Down
Ovary369 ± 94 of 4 2.20Up
Testis18 ± 14 of 4 0.10Down
Male accessory glands191 ± 94 of 4 1.20None
Virgin spermatheca61 ± 24 of 4 0.37Down
Mated spermatheca76 ± 54 of 4 0.46Down
Adult carcass49 ± 44 of 4 0.30Down
Larval CNS154 ± 124 of 4 0.93None
Larval Salivary gland307 ± 244 of 4 1.86Up
Larval midgut50 ± 34 of 4 0.31Down
Larval tubule99 ± 24 of 4 0.60Down
Larval hindgut51 ± 24 of 4 0.31Down
Larval fat body56 ± 64 of 4 0.30Down
Larval trachea109 ± 164 of 4 0.66None
Larval carcass60 ± 54 of 4 0.36Down
S2 cells (growing)364 ± 214 of 4 2.20Up
Whole fly165 ± 194 of 4

Looking for FBgn0004643. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime