FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0004648 through 18771 annotations produced 1 hits

silver (svr):

Annotation Number : CG4122
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004648
Gbrowse : chrX:390510-401910 (+) // 100.0 //
Probeset : 1633733_a_at
Accessions : protein= NP_001138141; /// NP_525032; /// NP_726675; /// NP_788852; /// NP_996319; /// NP_996320; /// NP_996321; /// NP_996322;, nucleotide= NM_001144669; /// NM_080293; /// NM_166846; /// NM_176679; /// NM_206596; /// NM_206597; /// NM_206598; /// NM_206599;
Pathway : engulfment // inferred from mutant phenotype /// 0007476 // imaginal disc-derived wing morphogenesis // inferred from m
Interpro : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0004648.
Homophila reports that CG4122 is a close match (2e-75) to human gene CPN;CPN1;SCPN (NP_001299), a gene associated with Carboxypeptidase N deficiency, 212070 (3).
BioGrid reports that CG4122 interacts with CG9083 CG3978 CG6741 .
TRiP has 1 RNAi stocks for FBgn0004648 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	26 ± 2	4 of 4	0.80	Down
Head	32 ± 3	4 of 4	0.90	None
Eye	8 ± 2	0 of 4	0.26	Down
Thoracicoabdominal ganglion	18 ± 3	3 of 4	0.50	Down
Salivary gland	113 ± 15	4 of 4	3.30	Up
Crop	49 ± 6	4 of 4	1.40	None
Midgut	47 ± 4	3 of 4	1.40	None
Tubule	13 ± 2	0 of 4	0.40	Down
Hindgut	41 ± 0	4 of 4	1.20	Up
Heart	26 ± 2	4 of 4	0.78	None
Fat body	81 ± 19	4 of 4	2.38	Up
Ovary	52 ± 4	4 of 4	1.50	Up
Testis	10 ± 0	3 of 4	0.30	Down
Male accessory glands	77 ± 8	4 of 4	2.30	Up
Virgin spermatheca	21 ± 3	0 of 4	0.63	Down
Mated spermatheca	22 ± 1	2 of 4	0.66	Down
Adult carcass	53 ± 5	3 of 4	1.50	Up
Larval CNS	26 ± 1	4 of 4	0.78	Down
Larval Salivary gland	122 ± 14	4 of 4	3.56	Up
Larval midgut	35 ± 2	3 of 4	1.02	None
Larval tubule	37 ± 0	3 of 4	1.10	None
Larval hindgut	41 ± 3	4 of 4	1.21	None
Larval fat body	88 ± 10	4 of 4	2.60	Up
Larval trachea	30 ± 7	4 of 4	0.88	None
Larval carcass	27 ± 3	1 of 4	0.79	None
S2 cells (growing)	116 ± 7	4 of 4	3.40	Up
Whole fly	34 ± 1	4 of 4

Looking for FBgn0004648. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720