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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004649 through 18771 annotations produced 1 hits



YP receptor (yl):

Annotation Number : CG1372
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004649
Gbrowse : chrX:14087251-14093996 (+) // 100.0 //
Probeset : 1626299_at
Accessions : protein= NP_511151; /// NP_996433;, nucleotide= NM_078596; /// NM_206710;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from
FlyMine data for FBgn0004649.
BDGP gene expression has embryonic in situ data for yl: 4 pix of staining in 1 body parts.
Homophila reports that CG1372 is a close match (5e-11) to human gene ARMD3;FBLN5 (NP_006320), a gene associated with Cutis laxa, autosomal dominant, 123700 (3);Cutis laxa, autosomal recessive, 219100 (3);Macular degeneration, age-related, 3, 608895 (3).
BioGrid reports that CG1372 interacts with CG3711 CG31562 CG7835 .
TRiP has 1 RNAi stocks for FBgn0004649 available for purchase.
VDRC has 3 RNAi stocks for FBgn0004649 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head3 10 of 4 0.00Down
Eye5 10 of 4 0.01Down
Thoracicoabdominal ganglion2 00 of 4 0.00Down
Salivary gland8 20 of 4 0.02Down
Crop2 10 of 4 0.00Down
Midgut2 00 of 4 0.00Down
Tubule24 190 of 4 0.10Down
Hindgut3 10 of 4 0.00Down
Heart3 10 of 4 0.01Down
Fat body12 121 of 4 0.03Down
Ovary860 94 of 4 1.80Up
Testis4 10 of 4 0.00Down
Male accessory glands2 00 of 4 0.00Down
Virgin spermatheca13 12 of 4 0.03Down
Mated spermatheca6 10 of 4 0.01Down
Adult carcass24 62 of 4 0.10Down
Larval CNS2 10 of 4 0.01Down
Larval Salivary gland2 00 of 4 0.01Down
Larval midgut7 20 of 4 0.02Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut3 10 of 4 0.01Down
Larval fat body2 00 of 4 0.00Down
Larval trachea2 10 of 4 0.01Down
Larval carcass1 00 of 4 0.00Down
S2 cells (growing)5 10 of 4 0.01Down
Whole fly468 404 of 4

Looking for FBgn0004649. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime