FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0004652 through 18771 annotations produced 6 hits

(March 2006 (FlyBase/BDGP 5.3)):

Annotation Number : CG14307
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : fru
Gbrowse :
Probeset : 1641338_at
Accessions : protein= A4V334 /// Q29QE0 /// Q7KSD2 /// Q7KSD5 /// Q7KSD6 /// Q8IN81 /// Q8IS35 /// Q8IS36, nucleotide=
FlyMine data for fru.
BioGrid reports that CG14307 interacts with CG31999 CG15631 CG17666 CG4700 Dmel CG34168 CG9572 CG11853 CG11853 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	10 ± 1	2 of 4	10.70	Up
Head	1 ± 0	0 of 4	1.40	None
Eye	2 ± 0	0 of 4	2.97	None
Thoracicoabdominal ganglion	3 ± 0	0 of 4	3.20	Up
Salivary gland	15 ± 6	0 of 4	15.92	None
Crop	1 ± 0	0 of 4	1.40	None
Midgut	0 ± 0	0 of 4	1.00	None
Tubule	3 ± 0	0 of 4	3.50	Up
Hindgut	4 ± 2	0 of 4	4.30	None
Heart	3 ± 1	1 of 4	4.08	None
Fat body	8 ± 1	1 of 4	8.58	Up
Ovary	1 ± 0	0 of 4	1.30	None
Testis	3 ± 0	0 of 4	3.60	None
Male accessory glands	4 ± 1	0 of 4	4.70	None
Virgin spermatheca	2 ± 1	0 of 4	3.00	None
Mated spermatheca	2 ± 0	0 of 4	2.16	None
Adult carcass	3 ± 1	0 of 4	3.50	None
Larval CNS	1 ± 1	0 of 4	1.39	None
Larval Salivary gland	4 ± 1	0 of 4	4.92	None
Larval midgut	2 ± 1	0 of 4	2.87	None
Larval tubule	1 ± 0	0 of 4	1.60	None
Larval hindgut	2 ± 1	0 of 4	2.66	None
Larval fat body	2 ± 1	0 of 4	2.20	None
Larval trachea	23 ± 8	4 of 4	24.55	Up
Larval carcass	2 ± 1	0 of 4	3.00	None
S2 cells (growing)	20 ± 1	4 of 4	21.71	Up
Whole fly	1 ± 0	0 of 4

(March 2006 (FlyBase/BDGP 5.3)):

Annotation Number : CG14307
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : fru
Gbrowse :
Probeset : 1634379_a_at
Accessions : protein= A4V334 /// Q29QE0 /// Q7KSD2 /// Q7KSD5 /// Q7KSD6 /// Q8IN81 /// Q8IS35 /// Q8IS36, nucleotide=
FlyMine data for fru.
BioGrid reports that CG14307 interacts with CG31999 CG15631 CG17666 CG4700 Dmel CG34168 CG9572 CG11853 CG11853 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	28 ± 2	4 of 4	9.20	Up
Head	9 ± 2	0 of 4	3.10	None
Eye	32 ± 4	4 of 4	10.66	Up
Thoracicoabdominal ganglion	32 ± 6	3 of 4	10.70	Up
Salivary gland	7 ± 2	0 of 4	2.55	None
Crop	2 ± 0	0 of 4	0.70	None
Midgut	1 ± 0	0 of 4	0.60	None
Tubule	1 ± 0	0 of 4	0.60	None
Hindgut	1 ± 0	0 of 4	0.30	None
Heart	1 ± 0	0 of 4	0.49	None
Fat body	1 ± 0	0 of 4	0.57	None
Ovary	2 ± 0	0 of 4	0.80	None
Testis	11 ± 0	0 of 4	3.90	Up
Male accessory glands	3 ± 1	0 of 4	1.30	None
Virgin spermatheca	1 ± 0	0 of 4	0.52	None
Mated spermatheca	1 ± 0	0 of 4	0.47	None
Adult carcass	2 ± 0	0 of 4	0.90	None
Larval CNS	17 ± 8	0 of 4	5.78	Up
Larval Salivary gland	11 ± 2	0 of 4	3.89	Up
Larval midgut	14 ± 1	0 of 4	4.61	Up
Larval tubule	2 ± 0	0 of 4	0.90	None
Larval hindgut	15 ± 5	0 of 4	5.03	None
Larval fat body	3 ± 1	0 of 4	1.10	None
Larval trachea	30 ± 4	4 of 4	10.06	Up
Larval carcass	12 ± 2	0 of 4	3.99	Up
S2 cells (growing)	59 ± 4	4 of 4	19.43	Up
Whole fly	3 ± 0	0 of 4

(March 2006 (FlyBase/BDGP 5.3)):

Annotation Number : CG14307
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : fru
Gbrowse :
Probeset : 1632859_a_at
Accessions : protein= A4V334 /// Q29QE0 /// Q7KSD2 /// Q7KSD5 /// Q7KSD6 /// Q8IN81 /// Q8IS35 /// Q8IS36, nucleotide=
FlyMine data for fru.
BioGrid reports that CG14307 interacts with CG31999 CG15631 CG17666 CG4700 Dmel CG34168 CG9572 CG11853 CG11853 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	26 ± 2	4 of 4	2.50	Up
Head	8 ± 0	2 of 4	0.80	None
Eye	4 ± 1	1 of 4	0.46	None
Thoracicoabdominal ganglion	28 ± 6	4 of 4	2.70	None
Salivary gland	5 ± 3	0 of 4	0.48	None
Crop	7 ± 2	1 of 4	0.70	None
Midgut	3 ± 0	0 of 4	0.40	Down
Tubule	2 ± 0	0 of 4	0.20	Down
Hindgut	3 ± 1	0 of 4	0.30	Down
Heart	3 ± 0	0 of 4	0.34	Down
Fat body	2 ± 1	0 of 4	0.19	Down
Ovary	2 ± 0	0 of 4	0.20	Down
Testis	44 ± 2	4 of 4	4.30	Up
Male accessory glands	2 ± 0	0 of 4	0.30	Down
Virgin spermatheca	2 ± 0	0 of 4	0.27	Down
Mated spermatheca	4 ± 1	0 of 4	0.41	Down
Adult carcass	6 ± 0	0 of 4	0.60	Down
Larval CNS	28 ± 10	4 of 4	2.71	Up
Larval Salivary gland	28 ± 4	4 of 4	2.72	Up
Larval midgut	25 ± 3	3 of 4	2.43	Up
Larval tubule	9 ± 1	0 of 4	0.90	None
Larval hindgut	28 ± 2	4 of 4	2.72	Up
Larval fat body	4 ± 1	0 of 4	0.40	Down
Larval trachea	28 ± 6	4 of 4	2.77	Up
Larval carcass	26 ± 2	4 of 4	2.56	Up
S2 cells (growing)	96 ± 9	4 of 4	9.24	Up
Whole fly	10 ± 1	3 of 4

(March 2006 (FlyBase/BDGP 5.3)):

Annotation Number : CG14307
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : fru
Gbrowse :
Probeset : 1629904_at
Accessions : protein= A4V334 /// Q29QE0 /// Q7KSD2 /// Q7KSD5 /// Q7KSD6 /// Q8IN81 /// Q8IS35 /// Q8IS36, nucleotide=
FlyMine data for fru.
BioGrid reports that CG14307 interacts with CG31999 CG15631 CG17666 CG4700 Dmel CG34168 CG9572 CG11853 CG11853 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	6 ± 1	0 of 4	4.50	None
Head	3 ± 1	0 of 4	2.60	None
Eye	7 ± 0	0 of 4	5.50	Up
Thoracicoabdominal ganglion	10 ± 2	0 of 4	7.10	None
Salivary gland	4 ± 0	0 of 4	3.38	Up
Crop	2 ± 1	0 of 4	1.90	None
Midgut	1 ± 0	0 of 4	1.00	None
Tubule	2 ± 0	0 of 4	2.00	None
Hindgut	2 ± 0	0 of 4	1.80	Up
Heart	5 ± 1	0 of 4	3.71	None
Fat body	1 ± 0	0 of 4	0.91	None
Ovary	1 ± 1	0 of 4	1.30	None
Testis	16 ± 1	3 of 4	12.10	Up
Male accessory glands	1 ± 0	0 of 4	1.30	None
Virgin spermatheca	3 ± 1	0 of 4	2.41	None
Mated spermatheca	2 ± 0	0 of 4	1.73	None
Adult carcass	6 ± 3	0 of 4	4.60	None
Larval CNS	25 ± 4	4 of 4	17.93	Up
Larval Salivary gland	22 ± 2	3 of 4	15.82	Up
Larval midgut	14 ± 3	0 of 4	10.13	Up
Larval tubule	7 ± 2	0 of 4	5.60	None
Larval hindgut	27 ± 3	4 of 4	19.29	Up
Larval fat body	7 ± 3	1 of 4	5.30	None
Larval trachea	80 ± 8	4 of 4	57.62	Up
Larval carcass	23 ± 1	4 of 4	16.64	Up
S2 cells (growing)	22 ± 1	3 of 4	15.71	Up
Whole fly	1 ± 0	0 of 4

(March 2006 (FlyBase/BDGP 5.3)):

Annotation Number : CG14307
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : fru
Gbrowse :
Probeset : 1631498_a_at
Accessions : protein= A4V334 /// Q29QE0 /// Q7KSD2 /// Q7KSD5 /// Q7KSD6 /// Q8IN81 /// Q8IS35 /// Q8IS36, nucleotide=
FlyMine data for fru.
BioGrid reports that CG14307 interacts with CG31999 CG15631 CG17666 CG4700 Dmel CG34168 CG9572 CG11853 CG11853 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	233 ± 11	4 of 4	11.50	Up
Head	89 ± 10	4 of 4	4.40	Up
Eye	760 ± 137	4 of 4	37.36	Up
Thoracicoabdominal ganglion	228 ± 13	4 of 4	11.20	Up
Salivary gland	20 ± 1	3 of 4	1.01	None
Crop	15 ± 3	3 of 4	0.80	None
Midgut	11 ± 2	4 of 4	0.60	Down
Tubule	11 ± 1	2 of 4	0.60	Down
Hindgut	14 ± 1	4 of 4	0.70	Down
Heart	16 ± 0	4 of 4	0.81	Down
Fat body	19 ± 4	4 of 4	0.93	None
Ovary	6 ± 0	2 of 4	0.30	Down
Testis	28 ± 1	4 of 4	1.40	Up
Male accessory glands	9 ± 1	1 of 4	0.50	Down
Virgin spermatheca	15 ± 2	4 of 4	0.78	None
Mated spermatheca	16 ± 4	4 of 4	0.83	None
Adult carcass	45 ± 3	4 of 4	2.20	Up
Larval CNS	41 ± 4	4 of 4	2.06	Up
Larval Salivary gland	38 ± 2	4 of 4	1.88	Up
Larval midgut	24 ± 1	4 of 4	1.19	None
Larval tubule	16 ± 1	4 of 4	0.80	Down
Larval hindgut	34 ± 3	4 of 4	1.69	Up
Larval fat body	11 ± 1	1 of 4	0.60	Down
Larval trachea	207 ± 23	4 of 4	10.19	Up
Larval carcass	47 ± 5	4 of 4	2.32	Up
S2 cells (growing)	42 ± 3	4 of 4	2.07	Up
Whole fly	20 ± 0	4 of 4

(March 2006 (FlyBase/BDGP 5.3)):

Annotation Number : CG14307
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : fru
Gbrowse :
Probeset : 1624575_a_at
Accessions : protein= A4V334 /// Q29QE0 /// Q7KSD2 /// Q7KSD5 /// Q7KSD6 /// Q8IN81 /// Q8IS35 /// Q8IS36, nucleotide=
FlyMine data for fru.
BioGrid reports that CG14307 interacts with CG31999 CG15631 CG17666 CG4700 Dmel CG34168 CG9572 CG11853 CG11853 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	7 ± 2	1 of 4	0.90	None
Head	5 ± 1	0 of 4	0.70	None
Eye	5 ± 2	1 of 4	0.64	None
Thoracicoabdominal ganglion	10 ± 2	0 of 4	1.30	None
Salivary gland	13 ± 3	0 of 4	1.59	None
Crop	3 ± 1	0 of 4	0.40	None
Midgut	6 ± 1	0 of 4	0.80	None
Tubule	3 ± 0	0 of 4	0.40	Down
Hindgut	6 ± 2	0 of 4	0.70	None
Heart	4 ± 1	0 of 4	0.56	None
Fat body	2 ± 1	0 of 4	0.35	Down
Ovary	2 ± 0	0 of 4	0.30	Down
Testis	2 ± 1	0 of 4	0.30	Down
Male accessory glands	5 ± 2	0 of 4	0.60	None
Virgin spermatheca	3 ± 2	0 of 4	0.44	None
Mated spermatheca	3 ± 1	0 of 4	0.40	Down
Adult carcass	7 ± 1	0 of 4	0.90	None
Larval CNS	8 ± 1	0 of 4	0.98	None
Larval Salivary gland	10 ± 2	0 of 4	1.29	None
Larval midgut	9 ± 2	1 of 4	1.16	None
Larval tubule	7 ± 1	1 of 4	0.90	None
Larval hindgut	6 ± 0	0 of 4	0.76	None
Larval fat body	3 ± 1	0 of 4	0.50	Down
Larval trachea	10 ± 0	4 of 4	1.24	None
Larval carcass	11 ± 1	0 of 4	1.39	None
S2 cells (growing)	11 ± 1	0 of 4	1.43	None
Whole fly	8 ± 1	0 of 4

Looking for FBgn0004652. 6 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720