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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004654 through 18771 annotations produced 1 hits



6-phosphogluconate dehydrogenase (Pgd):

Annotation Number : CG3724
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004654
Gbrowse : chrX:2039168-2042599 (+) // 100.0 //
Probeset : 1631588_at
Accessions : protein= NP_476860;, nucleotide= NM_057512;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004616 // phosphogluconate dehydrogenase (deca
FlyMine data for FBgn0004654.
VDRC has 1 RNAi stocks for FBgn0004654 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain47 24 of 4 0.10Down
Head299 384 of 4 0.90None
Eye195 214 of 4 0.58Down
Thoracicoabdominal ganglion32 34 of 4 0.10Down
Salivary gland130 84 of 4 0.39Down
Crop851 84 of 4 2.50Up
Midgut470 144 of 4 1.40Up
Tubule851 294 of 4 2.50Up
Hindgut743 254 of 4 2.20Up
Heart995 564 of 4 2.97Up
Fat body1065 814 of 4 3.18Up
Ovary319 54 of 4 1.00None
Testis97 24 of 4 0.30Down
Male accessory glands94 104 of 4 0.30Down
Virgin spermatheca992 164 of 4 2.96Up
Mated spermatheca642 734 of 4 1.91Up
Adult carcass725 1114 of 4 2.20Up
Larval CNS73 64 of 4 0.22Down
Larval Salivary gland124 44 of 4 0.37Down
Larval midgut198 84 of 4 0.59Down
Larval tubule159 114 of 4 0.50Down
Larval hindgut240 94 of 4 0.72None
Larval fat body204 104 of 4 0.60Down
Larval trachea241 324 of 4 0.72Down
Larval carcass317 444 of 4 0.95None
S2 cells (growing)403 54 of 4 1.20None
Whole fly335 314 of 4

Looking for FBgn0004654. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime