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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004657 through 18771 annotations produced 2 hits



beta-integrin (mys):

Annotation Number : CG1560
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004657
Gbrowse : chrX:7955679-7964270 (+) // 100.0 //
Probeset : 1634649_at
Accessions : protein= NP_524793;, nucleotide= NM_080054;
Pathway : cell extension // inferred from genetic interaction /// 0007155 // cell adhesion // inferred from mutant phenotype ///
Interpro : open tracheal system // traceable author statement /// 0007427 // epithelial cell migration
FlyMine data for FBgn0004657.
BDGP gene expression has embryonic in situ data for mys: 19 pix of staining in 11 body parts.
Homophila reports that CG1560 is a close match (7e-12) to human gene TNX;TNXB;TNXB1;TNXB2;TNXBS (NP_061978), a gene associated with Ehlers-Danlos due to tenascin X deficiency, 606408 (3);Ehlers-Danlos syndrome, hypermobility type, 130020 (3).
BioGrid reports that CG1560 interacts with CG3619 CG10443 CG1765 CG3665 CG9623 CG9623 CG9623 CG9623 CG9623 CG9623 CG9623 CG9623 CG9623 CG9623 CG8118 CG10491 CG3411 CG3411 CG3411 CG3411 CG18069 CG32555 CG14938 CG6822 CG18076 CG18076 CG7954 CG6831 CG8095 CG10072 .
TRiP has 2 RNAi stocks for FBgn0004657 available for purchase.
VDRC has 3 RNAi stocks for FBgn0004657 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain161 164 of 4 1.10None
Head119 104 of 4 0.80None
Eye47 34 of 4 0.33Down
Thoracicoabdominal ganglion99 24 of 4 0.70Down
Salivary gland49 54 of 4 0.35Down
Crop334 154 of 4 2.30Up
Midgut345 274 of 4 2.40Up
Tubule140 124 of 4 1.00None
Hindgut263 124 of 4 1.80Up
Heart88 104 of 4 0.62Down
Fat body159 184 of 4 1.12None
Ovary213 134 of 4 1.50Up
Testis60 74 of 4 0.40Down
Male accessory glands205 184 of 4 1.40Up
Virgin spermatheca72 124 of 4 0.51Down
Mated spermatheca94 74 of 4 0.66Down
Adult carcass110 94 of 4 0.80Down
Larval CNS248 254 of 4 1.74Up
Larval Salivary gland444 844 of 4 3.11Up
Larval midgut368 114 of 4 2.58Up
Larval tubule298 194 of 4 2.10Up
Larval hindgut662 214 of 4 4.64Up
Larval fat body140 204 of 4 1.00None
Larval trachea161 54 of 4 1.13None
Larval carcass588 1144 of 4 4.12Up
S2 cells (growing)1420 1104 of 4 9.95Up
Whole fly142 74 of 4



beta-integrin (mys):

Annotation Number : CG1560
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004657
Gbrowse : chrX:7955679-7964270 (+) // 100.0 //
Probeset : 1639245_x_at
Accessions : protein= NP_524793;, nucleotide= NM_080054;
Pathway : cell extension // inferred from genetic interaction /// 0007155 // cell adhesion // inferred from mutant phenotype ///
Interpro : open tracheal system // traceable author statement /// 0007427 // epithelial cell migration
FlyMine data for FBgn0004657.
BDGP gene expression has embryonic in situ data for mys: 19 pix of staining in 11 body parts.
Homophila reports that CG1560 is a close match (7e-12) to human gene TNX;TNXB;TNXB1;TNXB2;TNXBS (NP_061978), a gene associated with Ehlers-Danlos due to tenascin X deficiency, 606408 (3);Ehlers-Danlos syndrome, hypermobility type, 130020 (3).
BioGrid reports that CG1560 interacts with CG3619 CG10443 CG1765 CG3665 CG9623 CG9623 CG9623 CG9623 CG9623 CG9623 CG9623 CG9623 CG9623 CG9623 CG8118 CG10491 CG3411 CG3411 CG3411 CG3411 CG18069 CG32555 CG14938 CG6822 CG18076 CG18076 CG7954 CG6831 CG8095 CG10072 .
TRiP has 2 RNAi stocks for FBgn0004657 available for purchase.
VDRC has 3 RNAi stocks for FBgn0004657 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain236 104 of 4 1.00None
Head196 134 of 4 0.80None
Eye112 134 of 4 0.46Down
Thoracicoabdominal ganglion165 124 of 4 0.70None
Salivary gland104 64 of 4 0.43Down
Crop701 384 of 4 2.90Up
Midgut685 304 of 4 2.80Up
Tubule234 274 of 4 1.00None
Hindgut492 84 of 4 2.00Up
Heart205 224 of 4 0.84None
Fat body209 224 of 4 0.85None
Ovary322 164 of 4 1.30None
Testis102 74 of 4 0.40Down
Male accessory glands303 144 of 4 1.20None
Virgin spermatheca113 114 of 4 0.46Down
Mated spermatheca136 124 of 4 0.56Down
Adult carcass192 194 of 4 0.80None
Larval CNS337 144 of 4 1.38None
Larval Salivary gland800 904 of 4 3.27Up
Larval midgut472 124 of 4 1.93Up
Larval tubule562 324 of 4 2.30Up
Larval hindgut1018 134 of 4 4.15Up
Larval fat body245 364 of 4 1.00None
Larval trachea468 1294 of 4 1.91Up
Larval carcass948 1204 of 4 3.87Up
S2 cells (growing)2037 854 of 4 8.31Up
Whole fly245 304 of 4

Looking for FBgn0004657. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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