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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0004666 through 18771 annotations produced 1 hits


single-minded (sim):

Annotation Number : CG7771
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004666
Gbrowse : chr3R:8883480-8903950 (+) // 100.0 //
Probeset : 1625940_s_at
Accessions : protein= NP_524340; /// NP_731771;, nucleotide= NM_079616; /// NM_169495;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription
Interpro : DNA-dependent // non-traceable author statement /// 0007165 // signal transduction // inferred from electronic annotati
FlyMine data for FBgn0004666.
BDGP gene expression has embryonic in situ data for sim: 43 pix of staining in 8 body parts.
Homophila reports that CG7771 is a close match (2e-52) to human gene ECYT4;EPAS1;HIF2A;MOP2 (NP_001421), a gene associated with Erythrocytosis, familial, 4, 611783 (3).
BioGrid reports that CG7771 interacts with CG5893 CG10798 CG8355 CG3938 CG11987 CG11987 CG9397 .
TRiP has 2 RNAi stocks for FBgn0004666 available for purchase.
VDRC has 2 RNAi stocks for FBgn0004666 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain23 ± 04 of 4 0.50Down
Head7 ± 11 of 4 0.20Down
Eye12 ± 13 of 4 0.28Down
Thoracicoabdominal ganglion9 ± 13 of 4 0.20Down
Salivary gland3 ± 00 of 4 0.08Down
Crop4 ± 10 of 4 0.10Down
Midgut4 ± 10 of 4 0.10Down
Tubule2 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.00Down
Heart2 ± 10 of 4 0.06Down
Fat body4 ± 20 of 4 0.09Down
Ovary92 ± 64 of 4 2.10Up
Testis5 ± 11 of 4 0.10Down
Male accessory glands12 ± 32 of 4 0.30Down
Virgin spermatheca4 ± 01 of 4 0.10Down
Mated spermatheca5 ± 01 of 4 0.12Down
Adult carcass11 ± 22 of 4 0.20Down
Larval CNS70 ± 154 of 4 1.57Up
Larval Salivary gland6 ± 10 of 4 0.15Down
Larval midgut2 ± 00 of 4 0.05Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut4 ± 00 of 4 0.10Down
Larval fat body11 ± 43 of 4 0.30Down
Larval trachea1 ± 10 of 4 0.04Down
Larval carcass6 ± 00 of 4 0.14Down
S2 cells (growing)4 ± 00 of 4 0.09Down
Whole fly45 ± 44 of 4

Looking for FBgn0004666. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime