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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004687 through 18771 annotations produced 1 hits



alkali light chain of non-muscle myosin-II (Mlc-c):

Annotation Number : CG3201
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004687
Gbrowse : chrX:5513166-5516591 (-) // 100.0 //
Probeset : 1631832_at
Accessions : protein= NP_511049;, nucleotide= NM_078494;
Pathway : 0016459 // myosin complex // inferred from sequence or structural similarity /// 0016459 // myosin complex // inferred f
Interpro : "0003774 // motor activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from el
FlyMine data for FBgn0004687.
Homophila reports that CG3201 is a close match (4e-11) to human gene CABP4;CSNB2B (NP_660201), a gene associated with Night blindness, congenital stationary, type 2B, 610427 (3).
BioGrid reports that CG3201 interacts with CG5547 CG4217 .
VDRC has 3 RNAi stocks for FBgn0004687 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain596 ± 184 of 4 0.50Down
Head1040 ± 494 of 4 0.90None
Eye1925 ± 384 of 4 1.67Up
Thoracicoabdominal ganglion559 ± 144 of 4 0.50Down
Salivary gland3706 ± 884 of 4 3.21Up
Crop2943 ± 734 of 4 2.60Up
Midgut3409 ± 924 of 4 3.00Up
Tubule3336 ± 1864 of 4 2.90Up
Hindgut2031 ± 254 of 4 1.80Up
Heart1294 ± 494 of 4 1.12None
Fat body990 ± 1564 of 4 0.86None
Ovary1354 ± 174 of 4 1.20Up
Testis776 ± 274 of 4 0.70Down
Male accessory glands1781 ± 524 of 4 1.50Up
Virgin spermatheca1996 ± 394 of 4 1.73Up
Mated spermatheca2086 ± 1644 of 4 1.81Up
Adult carcass740 ± 74 of 4 0.60Down
Larval CNS1481 ± 1244 of 4 1.28Up
Larval Salivary gland6098 ± 1054 of 4 5.28Up
Larval midgut3929 ± 644 of 4 3.40Up
Larval tubule3560 ± 544 of 4 3.10Up
Larval hindgut2964 ± 904 of 4 2.57Up
Larval fat body1806 ± 1714 of 4 1.60Up
Larval trachea2995 ± 3544 of 4 2.60Up
Larval carcass2060 ± 604 of 4 1.79Up
S2 cells (growing)2761 ± 504 of 4 2.39Up
Whole fly1154 ± 474 of 4

Looking for FBgn0004687. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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