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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004777 through 18771 annotations produced 1 hits



cuticle cluster 2 (Ccp84Ag):

Annotation Number : CG2342
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004777
Gbrowse : chr3R:2512449-2513762 (+) // 100.0 //
Probeset : 1629486_at
Accessions : protein= NP_649677;, nucleotide= NM_141420;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0008010
FlyMine data for FBgn0004777.
BDGP gene expression has embryonic in situ data for Ccp84Ag: 15 pix of staining in 3 body parts.
BioGrid reports that CG2342 interacts with CG7641 .
VDRC has 1 RNAi stocks for FBgn0004777 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.30None
Head5 11 of 4 0.90None
Eye9 24 of 4 1.72None
Thoracicoabdominal ganglion3 10 of 4 0.60None
Salivary gland4 30 of 4 0.84None
Crop1 00 of 4 0.20None
Midgut0 00 of 4 0.10None
Tubule2 00 of 4 0.50Down
Hindgut2 00 of 4 0.40None
Heart5 10 of 4 0.91None
Fat body9 11 of 4 1.65None
Ovary1 01 of 4 0.30None
Testis0 00 of 4 0.10None
Male accessory glands2 10 of 4 0.40None
Virgin spermatheca4 21 of 4 0.74None
Mated spermatheca4 11 of 4 0.82None
Adult carcass2 00 of 4 0.40None
Larval CNS2 11 of 4 0.47None
Larval Salivary gland4 10 of 4 0.72None
Larval midgut2 00 of 4 0.39None
Larval tubule4 10 of 4 0.80None
Larval hindgut2 00 of 4 0.39None
Larval fat body5 20 of 4 0.90None
Larval trachea600 874 of 4104.94Up
Larval carcass0 00 of 4 0.17None
S2 cells (growing)0 00 of 4 0.14None
Whole fly5 21 of 4

Looking for FBgn0004777. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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