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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004781 through 18771 annotations produced 1 hits



cuticle cluster 6 (Ccp84Ac):

Annotation Number : CG1327
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004781
Gbrowse : chr3R:2521186-2521993 (-) // 100.0 //
Probeset : 1624311_at
Accessions : protein= NP_649681;, nucleotide= NM_141424;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0008010
FlyMine data for FBgn0004781.
VDRC has 3 RNAi stocks for FBgn0004781 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 1.10None
Head2 ± 00 of 4 1.30None
Eye1 ± 00 of 4 0.69None
Thoracicoabdominal ganglion3 ± 10 of 4 1.60None
Salivary gland4 ± 10 of 4 2.00None
Crop3 ± 00 of 4 1.60None
Midgut3 ± 00 of 4 1.70Up
Tubule3 ± 00 of 4 1.60None
Hindgut3 ± 00 of 4 1.50None
Heart1 ± 00 of 4 0.46None
Fat body7 ± 70 of 4 3.26None
Ovary1 ± 00 of 4 0.60None
Testis5 ± 10 of 4 2.60Up
Male accessory glands5 ± 20 of 4 2.70None
Virgin spermatheca3 ± 00 of 4 1.60None
Mated spermatheca4 ± 10 of 4 2.26None
Adult carcass5 ± 00 of 4 2.40Up
Larval CNS3 ± 10 of 4 1.68None
Larval Salivary gland5 ± 00 of 4 2.64Up
Larval midgut10 ± 30 of 4 4.85None
Larval tubule1 ± 00 of 4 0.90None
Larval hindgut5 ± 20 of 4 2.48None
Larval fat body8 ± 30 of 4 4.00None
Larval trachea6 ± 60 of 4 2.82None
Larval carcass12 ± 20 of 4 5.82Up
S2 cells (growing)2 ± 00 of 4 1.34None
Whole fly2 ± 00 of 4

Looking for FBgn0004781. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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