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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004783 through 18771 annotations produced 1 hits



cuticle cluster 8 /// cuticle cluster 7 (Ccp84Aa /// Ccp84Ab):

Annotation Number : CG2360
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004782 /// FBgn0004783
Gbrowse : chr3R:2529803-2530625 (+) // 100.0 // /// chr3R:2527846-2528455 (-) // 76.4 //
Probeset : 1625707_s_at
Accessions : protein= NP_649682; /// NP_649683;, nucleotide= NM_141425; /// NM_141426;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0005515
FlyMine data for FBgn0004782 /// FBgn0004783.
BioGrid reports that CG2360 interacts with CG12723 CG15422 CG2341 CG6945 CG13047 CG15693 CG17018 CG32171 CG3891 CG4760 CG4818 CG7399 CG8383 CG9949 CG33522 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 10 of 4 0.10None
Head10 ± 31 of 4 0.70None
Eye6 ± 31 of 4 0.48None
Thoracicoabdominal ganglion3 ± 10 of 4 0.20None
Salivary gland5 ± 30 of 4 0.37None
Crop3 ± 00 of 4 0.20None
Midgut7 ± 20 of 4 0.50None
Tubule2 ± 00 of 4 0.20Down
Hindgut4 ± 10 of 4 0.30None
Heart5 ± 10 of 4 0.42None
Fat body2 ± 20 of 4 0.16None
Ovary3 ± 10 of 4 0.20None
Testis0 ± 00 of 4 0.00None
Male accessory glands10 ± 30 of 4 0.70None
Virgin spermatheca4 ± 10 of 4 0.33None
Mated spermatheca5 ± 10 of 4 0.41None
Adult carcass5 ± 30 of 4 0.40None
Larval CNS5 ± 20 of 4 0.40None
Larval Salivary gland6 ± 20 of 4 0.42None
Larval midgut6 ± 10 of 4 0.43None
Larval tubule1 ± 00 of 4 0.10None
Larval hindgut1 ± 00 of 4 0.10None
Larval fat body3 ± 10 of 4 0.30None
Larval trachea805 ± 1384 of 456.74Up
Larval carcass48 ± 272 of 4 3.43None
S2 cells (growing)4 ± 00 of 4 0.31None
Whole fly14 ± 42 of 4

Looking for FBgn0004783. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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