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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004784 through 18771 annotations produced 1 hits



protein kinase C (inaC):

Annotation Number : CG6518
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004784
Gbrowse : chr2R:12786087-12789083 (+) // 100.0 //
Probeset : 1637807_at
Accessions : protein= NP_476863;, nucleotide= NM_057515;
Pathway : engulfment // inferred from mutant phenotype /// 0006928 // cellular component movement // inferred from mutant phenoty
Interpro : 0005886 // plasma membrane // inferred from direct assay /// 0016027 // inaD signaling complex // traceable author state
FlyMine data for FBgn0004784.
BDGP gene expression has embryonic in situ data for inaC: 10 pix of staining in 2 body parts.
Homophila reports that CG6518 is a close match (4e-11) to human gene NTRK2;TRKB (NP_006171), a gene associated with Obesity, hyperphagia, and developmental delay (3).
BioGrid reports that CG6518 interacts with CG11111 CG11111 .
TRiP has 4 RNAi stocks for FBgn0004784 available for purchase.
VDRC has 3 RNAi stocks for FBgn0004784 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain96 ± 84 of 4 0.80None
Head1548 ± 614 of 412.90Up
Eye5030 ± 1674 of 441.94Up
Thoracicoabdominal ganglion3 ± 11 of 4 0.00Down
Salivary gland5 ± 10 of 4 0.04Down
Crop2 ± 10 of 4 0.00Down
Midgut6 ± 10 of 4 0.10Down
Tubule1 ± 00 of 4 0.00Down
Hindgut3 ± 10 of 4 0.00Down
Heart7 ± 30 of 4 0.06Down
Fat body3 ± 30 of 4 0.03Down
Ovary1 ± 00 of 4 0.00Down
Testis2 ± 00 of 4 0.00Down
Male accessory glands37 ± 34 of 4 0.30Down
Virgin spermatheca1 ± 00 of 4 0.01Down
Mated spermatheca4 ± 20 of 4 0.03Down
Adult carcass3 ± 00 of 4 0.00Down
Larval CNS3 ± 00 of 4 0.03Down
Larval Salivary gland2 ± 00 of 4 0.02Down
Larval midgut2 ± 10 of 4 0.02Down
Larval tubule2 ± 10 of 4 0.00Down
Larval hindgut3 ± 10 of 4 0.03Down
Larval fat body7 ± 10 of 4 0.10Down
Larval trachea80 ± 1581 of 4 0.67None
Larval carcass3 ± 00 of 4 0.03Down
S2 cells (growing)2 ± 00 of 4 0.02Down
Whole fly120 ± 74 of 4

Looking for FBgn0004784. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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