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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004795 through 18771 annotations produced 1 hits



dead ringer (retn):

Annotation Number : CG5403
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004795
Gbrowse : chr2R:19520134-19542343 (+) // 100.0 //
Probeset : 1625481_a_at
Accessions : protein= NP_476864; /// NP_788434;, nucleotide= NM_057516; /// NM_176254;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay ///
Interpro : 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // non-traceable author statement /// 00
FlyMine data for FBgn0004795.
BDGP gene expression has embryonic in situ data for retn: 26 pix of staining in 10 body parts.
BioGrid reports that CG5403 interacts with CG3166 CG9375 .
TRiP has 2 RNAi stocks for FBgn0004795 available for purchase.
VDRC has 3 RNAi stocks for FBgn0004795 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain48 ± 24 of 4 0.10Down
Head228 ± 184 of 4 0.60Down
Eye676 ± 174 of 4 1.65Up
Thoracicoabdominal ganglion50 ± 44 of 4 0.10Down
Salivary gland112 ± 34 of 4 0.27Down
Crop17 ± 23 of 4 0.00Down
Midgut75 ± 24 of 4 0.20Down
Tubule13 ± 51 of 4 0.00Down
Hindgut458 ± 84 of 4 1.10None
Heart4 ± 12 of 4 0.01Down
Fat body9 ± 24 of 4 0.02Down
Ovary1252 ± 64 of 4 3.10Up
Testis62 ± 34 of 4 0.20Down
Male accessory glands729 ± 434 of 4 1.80Up
Virgin spermatheca950 ± 464 of 4 2.32Up
Mated spermatheca1056 ± 1154 of 4 2.58Up
Adult carcass26 ± 93 of 4 0.10Down
Larval CNS29 ± 44 of 4 0.07Down
Larval Salivary gland67 ± 44 of 4 0.16Down
Larval midgut15 ± 14 of 4 0.04Down
Larval tubule9 ± 33 of 4 0.00Down
Larval hindgut234 ± 24 of 4 0.57Down
Larval fat body10 ± 21 of 4 0.00Down
Larval trachea11 ± 124 of 4 0.03Down
Larval carcass34 ± 44 of 4 0.08Down
S2 cells (growing)5 ± 02 of 4 0.01Down
Whole fly410 ± 284 of 4

Looking for FBgn0004795. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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