Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004797 through 18771 annotations produced 2 hits



midway (mdy):

Annotation Number : CG31991
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004797
Gbrowse : chr2L:16816664-16826973 (+) // 100.0 //
Probeset : 1636579_s_at
Accessions : protein= NP_609813; /// NP_724016; /// NP_724017; /// NP_995724;, nucleotide= NM_135969; /// NM_165194; /// NM_165195; /// NM_206002;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0004144 // diacylglycerol O-acyltransferase activity // inferred from direct assay /// 0004144 // diacylglycerol O-acylt
FlyMine data for FBgn0004797.
BDGP gene expression has embryonic in situ data for mdy: 10 pix of staining in 4 body parts.
VDRC has 3 RNAi stocks for FBgn0004797 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain41 24 of 4 0.40Down
Head249 74 of 4 2.10Up
Eye98 94 of 4 0.84None
Thoracicoabdominal ganglion41 44 of 4 0.40Down
Salivary gland32 11 of 4 0.28Down
Crop315 164 of 4 2.70Up
Midgut52 44 of 4 0.40Down
Tubule237 204 of 4 2.00Up
Hindgut164 74 of 4 1.40Up
Heart262 204 of 4 2.24Up
Fat body543 564 of 4 4.63Up
Ovary127 44 of 4 1.10None
Testis13 01 of 4 0.10Down
Male accessory glands2 00 of 4 0.00Down
Virgin spermatheca423 194 of 4 3.61Up
Mated spermatheca392 354 of 4 3.34Up
Adult carcass285 184 of 4 2.40Up
Larval CNS55 44 of 4 0.47Down
Larval Salivary gland114 104 of 4 0.98None
Larval midgut59 63 of 4 0.51Down
Larval tubule126 94 of 4 1.10None
Larval hindgut94 94 of 4 0.80None
Larval fat body224 334 of 4 1.90Up
Larval trachea40 124 of 4 0.35Down
Larval carcass107 184 of 4 0.92None
S2 cells (growing)84 14 of 4 0.72Down
Whole fly117 54 of 4



/// midway (CG31739 /// mdy):

Annotation Number : CG31739
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051739
Gbrowse : chr2L:16827097-16831705 (+) // 100.0 //
Probeset : 1629374_at
Accessions : protein= NP_724018;, nucleotide= NM_165196;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0051739.
BDGP gene expression has embryonic in situ data for CG31739: 4 pix of staining in 1 body parts.
Homophila reports that CG31739 is a close match (2e-149) to human gene ASPRS. LBSL;DARS2 (NP_060592), a gene associated with Leukoencephalopathy with brain stem and spinal cord involvement and lactate elevation, 611105 (3).
VDRC has 2 RNAi stocks for FBgn0051739 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain159 34 of 4 1.30Up
Head81 54 of 4 0.70Down
Eye45 34 of 4 0.38Down
Thoracicoabdominal ganglion123 34 of 4 1.00None
Salivary gland72 44 of 4 0.61Down
Crop90 24 of 4 0.80Down
Midgut92 34 of 4 0.80Down
Tubule116 44 of 4 1.00None
Hindgut88 34 of 4 0.70Down
Heart74 34 of 4 0.62Down
Fat body113 134 of 4 0.95None
Ovary260 44 of 4 2.20Up
Testis138 74 of 4 1.20None
Male accessory glands61 14 of 4 0.50Down
Virgin spermatheca70 44 of 4 0.59Down
Mated spermatheca70 34 of 4 0.59Down
Adult carcass62 54 of 4 0.50Down
Larval CNS353 254 of 4 2.97Up
Larval Salivary gland80 44 of 4 0.67Down
Larval midgut91 74 of 4 0.77Down
Larval tubule93 24 of 4 0.80Down
Larval hindgut131 64 of 4 1.11None
Larval fat body54 74 of 4 0.50Down
Larval trachea94 134 of 4 0.79Down
Larval carcass97 54 of 4 0.82Down
S2 cells (growing)235 94 of 4 1.98Up
Whole fly119 54 of 4

Looking for FBgn0004797. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime