Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004811 through 18771 annotations produced 3 hits



female sterile (2) ltoPP43 (fs(2)ltoPP43):

Annotation Number : CG10528
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004811
Gbrowse : chr2L:19793485-19795849 (-) // 100.0 //
Probeset : 1630781_at
Accessions : protein= NP_524940; /// NP_788076;, nucleotide= NM_080201; /// NM_176062;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0004811.
BDGP gene expression has embryonic in situ data for fs(2)ltoPP43: 4 pix of staining in 1 body parts.
BioGrid reports that CG10528 interacts with CG16812 CG3281 CG2709 CG3419 CG5089 CG5792 CG7386 .
TRiP has 1 RNAi stocks for FBgn0004811 available for purchase.
VDRC has 1 RNAi stocks for FBgn0004811 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain174 ± 24 of 4 1.30Up
Head136 ± 44 of 4 1.00None
Eye62 ± 04 of 4 0.45Down
Thoracicoabdominal ganglion210 ± 134 of 4 1.50Up
Salivary gland43 ± 14 of 4 0.31Down
Crop65 ± 34 of 4 0.50Down
Midgut61 ± 44 of 4 0.40Down
Tubule49 ± 24 of 4 0.40Down
Hindgut49 ± 14 of 4 0.40Down
Heart89 ± 54 of 4 0.65Down
Fat body226 ± 324 of 4 1.64Up
Ovary332 ± 64 of 4 2.40Up
Testis13 ± 24 of 4 0.10Down
Male accessory glands130 ± 44 of 4 0.90None
Virgin spermatheca213 ± 104 of 4 1.54Up
Mated spermatheca213 ± 64 of 4 1.54Up
Adult carcass100 ± 84 of 4 0.70Down
Larval CNS376 ± 384 of 4 2.72Up
Larval Salivary gland110 ± 44 of 4 0.80Down
Larval midgut87 ± 104 of 4 0.63Down
Larval tubule134 ± 74 of 4 1.00None
Larval hindgut69 ± 24 of 4 0.50Down
Larval fat body411 ± 494 of 4 3.00Up
Larval trachea82 ± 104 of 4 0.60Down
Larval carcass102 ± 74 of 4 0.74Down
S2 cells (growing)119 ± 74 of 4 0.86None
Whole fly138 ± 84 of 4



female sterile (2) ltoPP43 (fs(2)ltoPP43):

Annotation Number : CG10528
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004811
Gbrowse : chr2L:19792901-19795829 (-) // 100.0 //
Probeset : 1631139_a_at
Accessions : protein= NP_524940; /// NP_788076;, nucleotide= NM_080201; /// NM_176062;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0004811.
BDGP gene expression has embryonic in situ data for fs(2)ltoPP43: 4 pix of staining in 1 body parts.
BioGrid reports that CG10528 interacts with CG16812 CG3281 CG2709 CG3419 CG5089 CG5792 CG7386 .
TRiP has 1 RNAi stocks for FBgn0004811 available for purchase.
VDRC has 1 RNAi stocks for FBgn0004811 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain112 ± 24 of 4 0.70Down
Head97 ± 74 of 4 0.60Down
Eye50 ± 14 of 4 0.31Down
Thoracicoabdominal ganglion91 ± 44 of 4 0.60Down
Salivary gland47 ± 100 of 4 0.29Down
Crop57 ± 33 of 4 0.40Down
Midgut71 ± 44 of 4 0.40Down
Tubule37 ± 24 of 4 0.20Down
Hindgut56 ± 34 of 4 0.30Down
Heart61 ± 34 of 4 0.37Down
Fat body104 ± 114 of 4 0.64Down
Ovary292 ± 84 of 4 1.80Up
Testis187 ± 74 of 4 1.10None
Male accessory glands100 ± 114 of 4 0.60Down
Virgin spermatheca59 ± 34 of 4 0.36Down
Mated spermatheca48 ± 34 of 4 0.29Down
Adult carcass86 ± 114 of 4 0.50Down
Larval CNS127 ± 64 of 4 0.77Down
Larval Salivary gland57 ± 44 of 4 0.35Down
Larval midgut57 ± 44 of 4 0.35Down
Larval tubule96 ± 24 of 4 0.60Down
Larval hindgut73 ± 44 of 4 0.44Down
Larval fat body290 ± 154 of 4 1.80Up
Larval trachea80 ± 44 of 4 0.49Down
Larval carcass68 ± 91 of 4 0.41Down
S2 cells (growing)124 ± 54 of 4 0.75Down
Whole fly164 ± 64 of 4



female sterile (2) ltoPP43 (fs(2)ltoPP43):

Annotation Number : CG10528
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004811
Gbrowse : chr2L:19792901-19795829 (-) // 100.0 //
Probeset : 1640998_at
Accessions : protein= NP_524940; /// NP_788076;, nucleotide= NM_080201; /// NM_176062;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0004811.
BDGP gene expression has embryonic in situ data for fs(2)ltoPP43: 4 pix of staining in 1 body parts.
BioGrid reports that CG10528 interacts with CG16812 CG3281 CG2709 CG3419 CG5089 CG5792 CG7386 .
TRiP has 1 RNAi stocks for FBgn0004811 available for purchase.
VDRC has 1 RNAi stocks for FBgn0004811 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 ± 04 of 4 0.40Down
Head17 ± 04 of 4 0.40Down
Eye19 ± 04 of 4 0.45Down
Thoracicoabdominal ganglion17 ± 12 of 4 0.40Down
Salivary gland25 ± 32 of 4 0.57Down
Crop13 ± 04 of 4 0.30Down
Midgut23 ± 24 of 4 0.50Down
Tubule17 ± 04 of 4 0.40Down
Hindgut19 ± 04 of 4 0.40Down
Heart21 ± 24 of 4 0.49Down
Fat body32 ± 44 of 4 0.73Down
Ovary88 ± 34 of 4 2.00Up
Testis130 ± 64 of 4 2.90Up
Male accessory glands25 ± 14 of 4 0.60Down
Virgin spermatheca26 ± 14 of 4 0.59Down
Mated spermatheca27 ± 44 of 4 0.62Down
Adult carcass21 ± 42 of 4 0.50Down
Larval CNS47 ± 84 of 4 1.07None
Larval Salivary gland23 ± 14 of 4 0.53Down
Larval midgut44 ± 24 of 4 1.01None
Larval tubule26 ± 14 of 4 0.60Down
Larval hindgut33 ± 44 of 4 0.77None
Larval fat body56 ± 64 of 4 1.30None
Larval trachea24 ± 44 of 4 0.56Down
Larval carcass33 ± 24 of 4 0.76Down
S2 cells (growing)41 ± 34 of 4 0.94None
Whole fly44 ± 34 of 4

Looking for FBgn0004811. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime