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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0004828 through 18771 annotations produced 1 hits



histone H3.3 variant (His3.3B):

Annotation Number : CG8989
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004828
Gbrowse : chrX:9047270-9050717 (-) // 100.0 //
Probeset : 1623222_s_at
Accessions : protein= NP_511095; /// NP_523479; /// NP_723056; /// NP_727314; /// NP_788892;, nucleotide= NM_078540; /// NM_078755; /// NM_164624; /// NM_167180; /// NM_176719;
Pathway : 0000786 // nucleosome // inferred from sequence or structural similarity /// 0000786 // nucleosome // inferred from elec
Interpro : 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from el
FlyMine data for FBgn0004828.
BioGrid reports that CG8989 interacts with CG9383 .
TRiP has 1 RNAi stocks for FBgn0004828 available for purchase.
VDRC has 2 RNAi stocks for FBgn0004828 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1404 314 of 4 1.80Up
Head1097 1034 of 4 1.40None
Eye1489 1144 of 4 1.87Up
Thoracicoabdominal ganglion1082 964 of 4 1.40None
Salivary gland1175 294 of 4 1.48Up
Crop1072 254 of 4 1.30Up
Midgut600 304 of 4 0.80Down
Tubule524 394 of 4 0.70Down
Hindgut938 224 of 4 1.20Up
Heart938 324 of 4 1.18Up
Fat body473 854 of 4 0.59Down
Ovary1145 394 of 4 1.40Up
Testis241 204 of 4 0.30Down
Male accessory glands864 314 of 4 1.10None
Virgin spermatheca487 164 of 4 0.61Down
Mated spermatheca533 354 of 4 0.67Down
Adult carcass568 314 of 4 0.70Down
Larval CNS1636 704 of 4 2.06Up
Larval Salivary gland689 254 of 4 0.87None
Larval midgut381 84 of 4 0.48Down
Larval tubule814 94 of 4 1.00None
Larval hindgut803 234 of 4 1.01None
Larval fat body867 1084 of 4 1.10None
Larval trachea1480 1724 of 4 1.86Up
Larval carcass623 494 of 4 0.78Down
S2 cells (growing)2323 684 of 4 2.92Up
Whole fly795 414 of 4

Looking for FBgn0004828. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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