FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0004838 through 18771 annotations produced 1 hits

linha (Hrb27C):

Annotation Number : CG10377
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004838
Gbrowse : chr2L:6920709-6926122 (+) // 100.0 //
Probeset : 1632891_s_at
Accessions : protein= NP_001162897; /// NP_001162898; /// NP_476869; /// NP_723228; /// NP_723229;, nucleotide= NM_001169426; /// NM_001169427; /// NM_057521; /// NM_164720; /// NM_164721;
Pathway : via spliceosome // inferred from mutant phenotype"
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from direct assay /// 0
FlyMine data for FBgn0004838.
BDGP gene expression has embryonic in situ data for Hrb27C: 4 pix of staining in 1 body parts.
Homophila reports that CG10377 is a close match (3e-20) to human gene ALS10;TARDBP;TDP43 (NP_031401), a gene associated with Amyotrophic lateral sclerosis 10, 612069 (3).
BioGrid reports that CG10377 interacts with CG6354 CG7958 CG10699 CG14204 CG2199 CG3218 CG4617 CG6866 CG7583 CG7740 CG7937 CG8874 CG3839 CG10388 Dmel CG33691 .
TRiP has 3 RNAi stocks for FBgn0004838 available for purchase.
VDRC has 3 RNAi stocks for FBgn0004838 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	951 ± 21	4 of 4	0.70	Down
Head	563 ± 67	4 of 4	0.40	Down
Eye	561 ± 36	4 of 4	0.43	Down
Thoracicoabdominal ganglion	648 ± 62	4 of 4	0.50	Down
Salivary gland	567 ± 127	4 of 4	0.43	Down
Crop	887 ± 39	4 of 4	0.70	Down
Midgut	745 ± 18	4 of 4	0.60	Down
Tubule	368 ± 35	4 of 4	0.30	Down
Hindgut	843 ± 22	4 of 4	0.60	Down
Heart	970 ± 74	4 of 4	0.74	Down
Fat body	1074 ± 166	4 of 4	0.82	None
Ovary	2277 ± 38	4 of 4	1.70	Up
Testis	244 ± 18	4 of 4	0.20	Down
Male accessory glands	862 ± 9	4 of 4	0.70	Down
Virgin spermatheca	196 ± 10	4 of 4	0.15	Down
Mated spermatheca	221 ± 19	4 of 4	0.17	Down
Adult carcass	610 ± 104	4 of 4	0.50	Down
Larval CNS	1275 ± 39	4 of 4	0.97	None
Larval Salivary gland	1400 ± 43	4 of 4	1.06	None
Larval midgut	688 ± 28	4 of 4	0.52	Down
Larval tubule	1039 ± 48	4 of 4	0.80	Down
Larval hindgut	934 ± 43	4 of 4	0.71	Down
Larval fat body	1097 ± 61	4 of 4	0.80	Down
Larval trachea	1474 ± 133	4 of 4	1.12	None
Larval carcass	1004 ± 82	4 of 4	0.76	Down
S2 cells (growing)	1507 ± 18	4 of 4	1.15	Up
Whole fly	1316 ± 36	4 of 4

Looking for FBgn0004838. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720